Hb_002272_160

Information

Type transcription factor
Description TF Family: bHLH
Location Contig2272: 93051-94276
Sequence    

Annotation

kegg
ID rcu:RCOM_1430620
description DNA binding protein, putative
nr
ID XP_002512342.1
description DNA binding protein, putative [Ricinus communis]
swissprot
ID Q9SK91
description Transcription factor bHLH94 OS=Arabidopsis thaliana GN=BHLH94 PE=2 SV=2
trembl
ID B9RF23
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_1430620 PE=4 SV=1
Gene Ontology
ID GO:0046983
description transcription factor bhlh94-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23682: 92976-93920
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002272_160 0.0 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
2 Hb_027288_010 0.0809756446 - - mutt domain protein, putative [Ricinus communis]
3 Hb_000441_170 0.0877116986 - - PREDICTED: uncharacterized protein LOC105636851 [Jatropha curcas]
4 Hb_007483_030 0.0903458458 - - -
5 Hb_003052_070 0.0925405131 - - PREDICTED: peroxidase 11 [Jatropha curcas]
6 Hb_007747_030 0.0957349437 - - PREDICTED: WD repeat-containing protein LWD2-like [Jatropha curcas]
7 Hb_000567_310 0.1022323901 - - Miraculin precursor, putative [Ricinus communis]
8 Hb_098795_010 0.1045731346 - - PREDICTED: naringenin,2-oxoglutarate 3-dioxygenase-like [Jatropha curcas]
9 Hb_127743_030 0.1051946282 - - amino acid transporter, putative [Ricinus communis]
10 Hb_003166_040 0.1069250288 - - PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.1 [Jatropha curcas]
11 Hb_002374_110 0.1105457578 - - PREDICTED: uncharacterized protein LOC105638965 [Jatropha curcas]
12 Hb_000003_470 0.1129192707 - - conserved hypothetical protein [Ricinus communis]
13 Hb_025526_090 0.1136237001 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 [Jatropha curcas]
14 Hb_002900_070 0.1187945842 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002843_010 0.1228550207 - - hypothetical protein EUGRSUZ_H04984, partial [Eucalyptus grandis]
16 Hb_003786_060 0.1235303635 - - PREDICTED: transmembrane protein 220 [Jatropha curcas]
17 Hb_001328_110 0.1237497896 - - PREDICTED: LON peptidase N-terminal domain and RING finger protein 1-like [Jatropha curcas]
18 Hb_001173_050 0.124007345 - - DUF26 domain-containing protein 2 precursor, putative [Ricinus communis]
19 Hb_004586_080 0.1263345103 - - hypothetical protein POPTR_0002s10520g [Populus trichocarpa]
20 Hb_003581_240 0.1280579218 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_002272_160 Hb_002272_160 Hb_027288_010 Hb_027288_010 Hb_002272_160--Hb_027288_010 Hb_000441_170 Hb_000441_170 Hb_002272_160--Hb_000441_170 Hb_007483_030 Hb_007483_030 Hb_002272_160--Hb_007483_030 Hb_003052_070 Hb_003052_070 Hb_002272_160--Hb_003052_070 Hb_007747_030 Hb_007747_030 Hb_002272_160--Hb_007747_030 Hb_000567_310 Hb_000567_310 Hb_002272_160--Hb_000567_310 Hb_027288_010--Hb_007483_030 Hb_027288_010--Hb_003052_070 Hb_027288_010--Hb_007747_030 Hb_003166_040 Hb_003166_040 Hb_027288_010--Hb_003166_040 Hb_027288_010--Hb_000567_310 Hb_002900_070 Hb_002900_070 Hb_000441_170--Hb_002900_070 Hb_002232_400 Hb_002232_400 Hb_000441_170--Hb_002232_400 Hb_006006_070 Hb_006006_070 Hb_000441_170--Hb_006006_070 Hb_098795_010 Hb_098795_010 Hb_000441_170--Hb_098795_010 Hb_076895_020 Hb_076895_020 Hb_000441_170--Hb_076895_020 Hb_007483_030--Hb_007747_030 Hb_007483_030--Hb_003052_070 Hb_007483_030--Hb_003166_040 Hb_000407_110 Hb_000407_110 Hb_007483_030--Hb_000407_110 Hb_003052_070--Hb_000567_310 Hb_001328_110 Hb_001328_110 Hb_003052_070--Hb_001328_110 Hb_003052_070--Hb_007747_030 Hb_006538_050 Hb_006538_050 Hb_003052_070--Hb_006538_050 Hb_003786_060 Hb_003786_060 Hb_003052_070--Hb_003786_060 Hb_007747_030--Hb_003786_060 Hb_007747_030--Hb_003166_040 Hb_058526_010 Hb_058526_010 Hb_007747_030--Hb_058526_010 Hb_000567_310--Hb_006538_050 Hb_000567_310--Hb_001328_110 Hb_001173_050 Hb_001173_050 Hb_000567_310--Hb_001173_050 Hb_000567_310--Hb_003786_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.933316 17.6906 6.99127 6.69223 0.387011 0.0240331
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0393184 0.0724226 80.4605 0

CAGE analysis