Hb_002272_190

Information

Type -
Description -
Location Contig2272: 121016-124589
Sequence    

Annotation

kegg
ID rcu:RCOM_1430490
description Kinesin heavy chain, putative
nr
ID XP_002512339.1
description Kinesin heavy chain, putative [Ricinus communis]
swissprot
ID F9W301
description Kinesin-1-like protein PSS1 OS=Oryza sativa subsp. japonica GN=PSS1 PE=1 SV=1
trembl
ID B9RF20
description Kinesin-like protein OS=Ricinus communis GN=RCOM_1430490 PE=3 SV=1
Gene Ontology
ID GO:0005871
description kinesin-1-like protein pss1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002272_190 0.0 - - Kinesin heavy chain, putative [Ricinus communis]
2 Hb_007416_040 0.2189683879 - - glutamate receptor 2 plant, putative [Ricinus communis]
3 Hb_001865_110 0.2343771906 - - -
4 Hb_005222_020 0.2695128632 - - hypothetical protein [Beta vulgaris subsp. vulgaris]
5 Hb_000094_260 0.2768001714 - - conserved hypothetical protein [Ricinus communis]
6 Hb_007761_050 0.2954504012 - - calcineurin-like protein [Hevea brasiliensis]
7 Hb_001136_120 0.3077472269 - - -
8 Hb_000275_010 0.3082374806 - - -
9 Hb_001437_050 0.3083989595 - - PREDICTED: ABC transporter G family member 28 [Jatropha curcas]
10 Hb_001257_020 0.3085472698 - - -
11 Hb_106029_010 0.3132693204 - - Transcription factor ICE1, putative [Ricinus communis]
12 Hb_171529_010 0.3211224765 - - -
13 Hb_000713_020 0.3223207727 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
14 Hb_000284_070 0.3252839979 - - hypothetical protein JCGZ_00222 [Jatropha curcas]
15 Hb_012532_030 0.3259444533 - - -
16 Hb_000270_150 0.3270067127 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
17 Hb_015401_010 0.3387760442 - - hypothetical protein VITISV_001548 [Vitis vinifera]
18 Hb_002768_020 0.3387991616 transcription factor TF Family: MYB hypothetical protein JCGZ_00902 [Jatropha curcas]
19 Hb_148262_020 0.3390727173 - - -
20 Hb_030765_010 0.3429376005 desease resistance Gene Name: ABC_tran PREDICTED: ABC transporter G family member 11-like isoform X1 [Solanum lycopersicum]

Gene co-expression network

sample Hb_002272_190 Hb_002272_190 Hb_007416_040 Hb_007416_040 Hb_002272_190--Hb_007416_040 Hb_001865_110 Hb_001865_110 Hb_002272_190--Hb_001865_110 Hb_005222_020 Hb_005222_020 Hb_002272_190--Hb_005222_020 Hb_000094_260 Hb_000094_260 Hb_002272_190--Hb_000094_260 Hb_007761_050 Hb_007761_050 Hb_002272_190--Hb_007761_050 Hb_001136_120 Hb_001136_120 Hb_002272_190--Hb_001136_120 Hb_000123_200 Hb_000123_200 Hb_007416_040--Hb_000123_200 Hb_160366_010 Hb_160366_010 Hb_007416_040--Hb_160366_010 Hb_007416_040--Hb_000094_260 Hb_011349_010 Hb_011349_010 Hb_007416_040--Hb_011349_010 Hb_007416_040--Hb_001865_110 Hb_001865_110--Hb_005222_020 Hb_106029_010 Hb_106029_010 Hb_001865_110--Hb_106029_010 Hb_000501_020 Hb_000501_020 Hb_001865_110--Hb_000501_020 Hb_141408_010 Hb_141408_010 Hb_001865_110--Hb_141408_010 Hb_148262_020 Hb_148262_020 Hb_001865_110--Hb_148262_020 Hb_000270_150 Hb_000270_150 Hb_001865_110--Hb_000270_150 Hb_000275_010 Hb_000275_010 Hb_005222_020--Hb_000275_010 Hb_001379_130 Hb_001379_130 Hb_005222_020--Hb_001379_130 Hb_000003_770 Hb_000003_770 Hb_005222_020--Hb_000003_770 Hb_005222_020--Hb_000501_020 Hb_000736_010 Hb_000736_010 Hb_005222_020--Hb_000736_010 Hb_000094_260--Hb_005222_020 Hb_000094_260--Hb_000003_770 Hb_000094_260--Hb_001379_130 Hb_039305_010 Hb_039305_010 Hb_000094_260--Hb_039305_010 Hb_000094_260--Hb_000275_010 Hb_001257_020 Hb_001257_020 Hb_007761_050--Hb_001257_020 Hb_000284_070 Hb_000284_070 Hb_007761_050--Hb_000284_070 Hb_088496_010 Hb_088496_010 Hb_007761_050--Hb_088496_010 Hb_007761_050--Hb_148262_020 Hb_007761_050--Hb_000003_770 Hb_004297_030 Hb_004297_030 Hb_007761_050--Hb_004297_030 Hb_001136_120--Hb_007416_040 Hb_012532_030 Hb_012532_030 Hb_001136_120--Hb_012532_030 Hb_171529_010 Hb_171529_010 Hb_001136_120--Hb_171529_010 Hb_000212_480 Hb_000212_480 Hb_001136_120--Hb_000212_480 Hb_156554_010 Hb_156554_010 Hb_001136_120--Hb_156554_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0158279 0 0.0491584 0 0 0.0579254
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.216638 0.0568074 0 0 0

CAGE analysis