Hb_002272_200

Information

Type -
Description -
Location Contig2272: 127592-130926
Sequence    

Annotation

kegg
ID rcu:RCOM_1430480
description Alpha-L-fucosidase 2 precursor, putative
nr
ID XP_012089108.1
description PREDICTED: GDSL esterase/lipase At1g54790 isoform X1 [Jatropha curcas]
swissprot
ID Q3ECP6
description GDSL esterase/lipase At1g54790 OS=Arabidopsis thaliana GN=At1g54790 PE=2 SV=1
trembl
ID U5GA90
description GDSL-motif lipase/hydrolase family protein OS=Populus trichocarpa GN=POPTR_0005s04100g PE=4 SV=1
Gene Ontology
ID GO:0016788
description gdsl-motif lipase hydrolase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23688: 128668-130937
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002272_200 0.0 - - PREDICTED: GDSL esterase/lipase At1g54790 isoform X1 [Jatropha curcas]
2 Hb_002490_030 0.1126435207 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002749_040 0.1389270917 - - Ribosomal protein L6 family protein [Theobroma cacao]
4 Hb_007749_020 0.1473271714 - - receptor-kinase, putative [Ricinus communis]
5 Hb_000260_110 0.1527878623 - - Nodulation receptor kinase precursor, putative [Ricinus communis]
6 Hb_066514_010 0.1528769115 - - hypothetical protein RCOM_0204720 [Ricinus communis]
7 Hb_000302_100 0.1575991935 - - PREDICTED: uncharacterized protein LOC105766209 [Gossypium raimondii]
8 Hb_155444_010 0.1592252603 - - -
9 Hb_000424_030 0.1609162337 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002900_100 0.1653579042 - - PREDICTED: L-type lectin-domain containing receptor kinase S.4-like [Jatropha curcas]
11 Hb_000011_260 0.1653869628 - - conserved hypothetical protein [Ricinus communis]
12 Hb_030685_010 0.1660610374 - - -
13 Hb_002774_120 0.1682326683 - - PREDICTED: uncharacterized protein LOC105630593 [Jatropha curcas]
14 Hb_007575_090 0.1695412588 - - putative. proteolipid subunit of vacuolar H+ ATPase, partial [Zea mays]
15 Hb_000363_260 0.1699949641 - - glycerophosphoryl diester phosphodiesterase, putative [Ricinus communis]
16 Hb_186247_010 0.1709363737 - - PREDICTED: uridine 5'-monophosphate synthase-like [Pyrus x bretschneideri]
17 Hb_000413_080 0.171582062 - - -
18 Hb_000032_430 0.1720893931 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002539_050 0.1754651165 - - PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3 [Jatropha curcas]
20 Hb_001675_290 0.178038569 - - PREDICTED: transcription factor bHLH68-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002272_200 Hb_002272_200 Hb_002490_030 Hb_002490_030 Hb_002272_200--Hb_002490_030 Hb_002749_040 Hb_002749_040 Hb_002272_200--Hb_002749_040 Hb_007749_020 Hb_007749_020 Hb_002272_200--Hb_007749_020 Hb_000260_110 Hb_000260_110 Hb_002272_200--Hb_000260_110 Hb_066514_010 Hb_066514_010 Hb_002272_200--Hb_066514_010 Hb_000302_100 Hb_000302_100 Hb_002272_200--Hb_000302_100 Hb_002900_100 Hb_002900_100 Hb_002490_030--Hb_002900_100 Hb_124951_020 Hb_124951_020 Hb_002490_030--Hb_124951_020 Hb_000816_190 Hb_000816_190 Hb_002490_030--Hb_000816_190 Hb_001366_170 Hb_001366_170 Hb_002490_030--Hb_001366_170 Hb_002490_030--Hb_066514_010 Hb_155444_010 Hb_155444_010 Hb_002749_040--Hb_155444_010 Hb_012395_050 Hb_012395_050 Hb_002749_040--Hb_012395_050 Hb_000032_430 Hb_000032_430 Hb_002749_040--Hb_000032_430 Hb_030685_010 Hb_030685_010 Hb_002749_040--Hb_030685_010 Hb_002518_020 Hb_002518_020 Hb_002749_040--Hb_002518_020 Hb_001675_290 Hb_001675_290 Hb_007749_020--Hb_001675_290 Hb_036029_020 Hb_036029_020 Hb_007749_020--Hb_036029_020 Hb_003529_240 Hb_003529_240 Hb_007749_020--Hb_003529_240 Hb_000172_230 Hb_000172_230 Hb_007749_020--Hb_000172_230 Hb_107658_010 Hb_107658_010 Hb_007749_020--Hb_107658_010 Hb_002233_160 Hb_002233_160 Hb_000260_110--Hb_002233_160 Hb_000011_280 Hb_000011_280 Hb_000260_110--Hb_000011_280 Hb_010883_180 Hb_010883_180 Hb_000260_110--Hb_010883_180 Hb_002900_180 Hb_002900_180 Hb_000260_110--Hb_002900_180 Hb_000069_560 Hb_000069_560 Hb_000260_110--Hb_000069_560 Hb_000462_070 Hb_000462_070 Hb_000260_110--Hb_000462_070 Hb_066514_010--Hb_002900_100 Hb_011918_010 Hb_011918_010 Hb_066514_010--Hb_011918_010 Hb_007441_090 Hb_007441_090 Hb_066514_010--Hb_007441_090 Hb_118507_010 Hb_118507_010 Hb_066514_010--Hb_118507_010 Hb_066514_010--Hb_000302_100 Hb_001357_030 Hb_001357_030 Hb_000302_100--Hb_001357_030 Hb_160405_010 Hb_160405_010 Hb_000302_100--Hb_160405_010 Hb_007575_090 Hb_007575_090 Hb_000302_100--Hb_007575_090 Hb_001329_020 Hb_001329_020 Hb_000302_100--Hb_001329_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.463203 3.29454 4.70001 18.5249 1.112 0.83529
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.386796 0.588367 0.268384 2.10121 2.2212

CAGE analysis