Hb_002272_220

Information

Type -
Description -
Location Contig2272: 133535-137295
Sequence    

Annotation

kegg
ID rcu:RCOM_1430460
description hypothetical protein
nr
ID XP_002512336.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RF17
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1430460 PE=4 SV=1
Gene Ontology
ID GO:0009507
description mog1 duf1795-like photosystem ii reaction center family protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23690: 136224-137094 , PASA_asmbl_23691: 133547-137242 , PASA_asmbl_23692: 133710-137207
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002272_220 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002411_100 0.1047394021 - - PREDICTED: uncharacterized protein LOC105631266 [Jatropha curcas]
3 Hb_000390_210 0.1128582549 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
4 Hb_010557_010 0.1140024511 - - PREDICTED: 50S ribosomal protein L3, chloroplastic [Jatropha curcas]
5 Hb_001623_380 0.1188161732 - - PREDICTED: 7-hydroxymethyl chlorophyll a reductase, chloroplastic [Jatropha curcas]
6 Hb_009393_130 0.1202929304 - - PREDICTED: uncharacterized protein LOC105638053 isoform X4 [Jatropha curcas]
7 Hb_000684_200 0.120796635 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
8 Hb_000749_260 0.1212241559 - - PREDICTED: protochlorophyllide reductase, chloroplastic [Jatropha curcas]
9 Hb_147378_010 0.1213359951 - - -
10 Hb_143004_020 0.1213771449 - - PREDICTED: phosphopantothenate--cysteine ligase 2-like [Jatropha curcas]
11 Hb_003948_020 0.1223868636 - - PREDICTED: transmembrane protein 41B [Jatropha curcas]
12 Hb_000061_250 0.1234081742 - - hypothetical protein JCGZ_11665 [Jatropha curcas]
13 Hb_000352_280 0.1240731424 - - PREDICTED: acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal isoform X2 [Jatropha curcas]
14 Hb_001047_180 0.1293484204 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000206_170 0.1325554158 - - hypothetical protein JCGZ_25514 [Jatropha curcas]
16 Hb_006153_150 0.1336489442 - - PREDICTED: uncharacterized protein LOC105645999 [Jatropha curcas]
17 Hb_003680_060 0.1354400518 - - hypothetical protein VITISV_022322 [Vitis vinifera]
18 Hb_089966_010 0.1355047209 - - -
19 Hb_000442_070 0.1380455104 - - PREDICTED: uncharacterized protein LOC105645538 [Jatropha curcas]
20 Hb_004459_060 0.1381251868 - - 50S ribosomal protein L34, chloroplast precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_002272_220 Hb_002272_220 Hb_002411_100 Hb_002411_100 Hb_002272_220--Hb_002411_100 Hb_000390_210 Hb_000390_210 Hb_002272_220--Hb_000390_210 Hb_010557_010 Hb_010557_010 Hb_002272_220--Hb_010557_010 Hb_001623_380 Hb_001623_380 Hb_002272_220--Hb_001623_380 Hb_009393_130 Hb_009393_130 Hb_002272_220--Hb_009393_130 Hb_000684_200 Hb_000684_200 Hb_002272_220--Hb_000684_200 Hb_003948_020 Hb_003948_020 Hb_002411_100--Hb_003948_020 Hb_002411_100--Hb_010557_010 Hb_000703_070 Hb_000703_070 Hb_002411_100--Hb_000703_070 Hb_001047_180 Hb_001047_180 Hb_002411_100--Hb_001047_180 Hb_004459_060 Hb_004459_060 Hb_002411_100--Hb_004459_060 Hb_005563_040 Hb_005563_040 Hb_002411_100--Hb_005563_040 Hb_001544_050 Hb_001544_050 Hb_000390_210--Hb_001544_050 Hb_000749_260 Hb_000749_260 Hb_000390_210--Hb_000749_260 Hb_147378_010 Hb_147378_010 Hb_000390_210--Hb_147378_010 Hb_143004_020 Hb_143004_020 Hb_000390_210--Hb_143004_020 Hb_000061_250 Hb_000061_250 Hb_000390_210--Hb_000061_250 Hb_000322_030 Hb_000322_030 Hb_000390_210--Hb_000322_030 Hb_002811_250 Hb_002811_250 Hb_010557_010--Hb_002811_250 Hb_010557_010--Hb_000703_070 Hb_000803_170 Hb_000803_170 Hb_010557_010--Hb_000803_170 Hb_010557_010--Hb_009393_130 Hb_000045_050 Hb_000045_050 Hb_010557_010--Hb_000045_050 Hb_001135_070 Hb_001135_070 Hb_001623_380--Hb_001135_070 Hb_008707_040 Hb_008707_040 Hb_001623_380--Hb_008707_040 Hb_003680_060 Hb_003680_060 Hb_001623_380--Hb_003680_060 Hb_177281_010 Hb_177281_010 Hb_001623_380--Hb_177281_010 Hb_000393_040 Hb_000393_040 Hb_001623_380--Hb_000393_040 Hb_009393_130--Hb_003680_060 Hb_007803_040 Hb_007803_040 Hb_009393_130--Hb_007803_040 Hb_003605_060 Hb_003605_060 Hb_009393_130--Hb_003605_060 Hb_009838_070 Hb_009838_070 Hb_009393_130--Hb_009838_070 Hb_009393_130--Hb_002811_250 Hb_000684_200--Hb_010557_010 Hb_004162_270 Hb_004162_270 Hb_000684_200--Hb_004162_270 Hb_000684_200--Hb_002811_250 Hb_004837_100 Hb_004837_100 Hb_000684_200--Hb_004837_100 Hb_010098_040 Hb_010098_040 Hb_000684_200--Hb_010098_040 Hb_005181_120 Hb_005181_120 Hb_000684_200--Hb_005181_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.80476 1.57308 23.3007 11.5526 0.24573 1.07682
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.96435 3.03822 0.719618 1.81448 22.2614

CAGE analysis