Hb_002272_230

Information

Type -
Description -
Location Contig2272: 139358-144189
Sequence    

Annotation

kegg
ID rcu:RCOM_1430330
description sodium/hydrogen exchanger, putative
nr
ID XP_002512334.1
description sodium/hydrogen exchanger, putative [Ricinus communis]
swissprot
ID Q56XP4
description Sodium/hydrogen exchanger 2 OS=Arabidopsis thaliana GN=NHX2 PE=2 SV=2
trembl
ID B9RF15
description Sodium/hydrogen exchanger OS=Ricinus communis GN=RCOM_1430330 PE=3 SV=1
Gene Ontology
ID GO:0005774
description sodium hydrogen exchanger 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23694: 139412-144191
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002272_230 0.0 - - sodium/hydrogen exchanger, putative [Ricinus communis]
2 Hb_004631_080 0.0973063221 - - P3B-ATPase PH1 [Petunia x hybrida]
3 Hb_004041_100 0.1283945413 - - -
4 Hb_025526_080 0.1311842139 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 [Vitis vinifera]
5 Hb_000347_110 0.1354662663 - - BnaA05g25330D [Brassica napus]
6 Hb_002200_060 0.1369301048 - - PREDICTED: pleckstrin homology domain-containing family A member 8 [Jatropha curcas]
7 Hb_002030_170 0.1381376801 - - PREDICTED: calcium-transporting ATPase 1-like [Jatropha curcas]
8 Hb_000173_260 0.1402088678 - - hypothetical protein L484_010046 [Morus notabilis]
9 Hb_011200_020 0.1446657531 - - aldo-keto reductase, putative [Ricinus communis]
10 Hb_000473_070 0.1457787695 - - PREDICTED: amino-acid permease BAT1 homolog [Jatropha curcas]
11 Hb_031042_030 0.1505902107 - - PREDICTED: WAT1-related protein At5g47470-like isoform X1 [Jatropha curcas]
12 Hb_001474_010 0.1549987242 - - PREDICTED: synaptotagmin-3 isoform X1 [Jatropha curcas]
13 Hb_082683_010 0.1646797432 - - PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris]
14 Hb_001024_030 0.169303834 - - PREDICTED: E3 ubiquitin-protein ligase RGLG2-like isoform X1 [Jatropha curcas]
15 Hb_011360_060 0.1709794661 - - glycogen phosphorylase, putative [Ricinus communis]
16 Hb_002811_020 0.1726382905 - - Cysteine synthase [Morus notabilis]
17 Hb_000077_330 0.1727934147 - - PREDICTED: bifunctional epoxide hydrolase 2-like [Jatropha curcas]
18 Hb_004800_220 0.1743122478 - - PREDICTED: random slug protein 5 [Jatropha curcas]
19 Hb_003626_040 0.1748247785 - - PREDICTED: probable 2-oxoglutarate-dependent dioxygenase At3g49630 isoform X2 [Jatropha curcas]
20 Hb_001493_020 0.1752616895 - - leucine-rich repeat receptor-like protein kinase [Manihot esculenta]

Gene co-expression network

sample Hb_002272_230 Hb_002272_230 Hb_004631_080 Hb_004631_080 Hb_002272_230--Hb_004631_080 Hb_004041_100 Hb_004041_100 Hb_002272_230--Hb_004041_100 Hb_025526_080 Hb_025526_080 Hb_002272_230--Hb_025526_080 Hb_000347_110 Hb_000347_110 Hb_002272_230--Hb_000347_110 Hb_002200_060 Hb_002200_060 Hb_002272_230--Hb_002200_060 Hb_002030_170 Hb_002030_170 Hb_002272_230--Hb_002030_170 Hb_004631_080--Hb_002030_170 Hb_004631_080--Hb_000347_110 Hb_001842_060 Hb_001842_060 Hb_004631_080--Hb_001842_060 Hb_004631_080--Hb_025526_080 Hb_000173_260 Hb_000173_260 Hb_004631_080--Hb_000173_260 Hb_004041_100--Hb_000347_110 Hb_000625_030 Hb_000625_030 Hb_004041_100--Hb_000625_030 Hb_000181_020 Hb_000181_020 Hb_004041_100--Hb_000181_020 Hb_004041_100--Hb_000173_260 Hb_008749_020 Hb_008749_020 Hb_004041_100--Hb_008749_020 Hb_001500_070 Hb_001500_070 Hb_004041_100--Hb_001500_070 Hb_031042_030 Hb_031042_030 Hb_025526_080--Hb_031042_030 Hb_000473_070 Hb_000473_070 Hb_025526_080--Hb_000473_070 Hb_004800_220 Hb_004800_220 Hb_025526_080--Hb_004800_220 Hb_004656_010 Hb_004656_010 Hb_025526_080--Hb_004656_010 Hb_003813_120 Hb_003813_120 Hb_000347_110--Hb_003813_120 Hb_000347_110--Hb_000173_260 Hb_011360_060 Hb_011360_060 Hb_000347_110--Hb_011360_060 Hb_000347_110--Hb_000181_020 Hb_003626_040 Hb_003626_040 Hb_000347_110--Hb_003626_040 Hb_000521_360 Hb_000521_360 Hb_002200_060--Hb_000521_360 Hb_002200_060--Hb_000473_070 Hb_000265_080 Hb_000265_080 Hb_002200_060--Hb_000265_080 Hb_006788_150 Hb_006788_150 Hb_002200_060--Hb_006788_150 Hb_002200_060--Hb_004800_220 Hb_002030_170--Hb_001842_060 Hb_002660_040 Hb_002660_040 Hb_002030_170--Hb_002660_040 Hb_000313_370 Hb_000313_370 Hb_002030_170--Hb_000313_370 Hb_002662_090 Hb_002662_090 Hb_002030_170--Hb_002662_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.278088 3.72944 3.0854 1.99886 0.342929 0.796541
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.4696 0.314066 0.174995 11.1905 2.88611

CAGE analysis