Hb_002272_240

Information

Type -
Description -
Location Contig2272: 146242-149797
Sequence    

Annotation

kegg
ID rcu:RCOM_1430320
description catalytic, putative
nr
ID XP_002512333.1
description catalytic, putative [Ricinus communis]
swissprot
ID Q6DBG8
description Probable arabinosyltransferase ARAD1 OS=Arabidopsis thaliana GN=ARAD1 PE=1 SV=1
trembl
ID B9RF14
description Catalytic, putative OS=Ricinus communis GN=RCOM_1430320 PE=4 SV=1
Gene Ontology
ID GO:0050508
description probable arabinosyltransferase arad1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23695: 146977-147746 , PASA_asmbl_23696: 147255-147667 , PASA_asmbl_23697: 146249-149530
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002272_240 0.0 - - catalytic, putative [Ricinus communis]
2 Hb_013726_050 0.0528730629 - - PREDICTED: probable methyltransferase PMT13 [Jatropha curcas]
3 Hb_001691_040 0.0728050693 - - PREDICTED: uncharacterized protein LOC105649546 isoform X2 [Jatropha curcas]
4 Hb_007919_110 0.074790795 - - PREDICTED: UDP-galactose transporter 2-like [Jatropha curcas]
5 Hb_006120_050 0.0750308364 - - PREDICTED: importin subunit alpha-4-like [Jatropha curcas]
6 Hb_002304_050 0.0783900716 - - pyruvate kinase, putative [Ricinus communis]
7 Hb_001754_020 0.0833327568 - - PREDICTED: kinesin-13A isoform X1 [Jatropha curcas]
8 Hb_010672_020 0.083663956 - - PREDICTED: ATP synthase gamma chain, chloroplastic-like [Jatropha curcas]
9 Hb_000258_420 0.0841723681 - - sucrose transporter 2A [Hevea brasiliensis]
10 Hb_011310_110 0.0860351467 - - PREDICTED: probable sugar phosphate/phosphate translocator At5g25400 isoform X1 [Jatropha curcas]
11 Hb_000815_300 0.090664439 - - Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]
12 Hb_003777_030 0.091735907 - - Exocyst complex component, putative [Ricinus communis]
13 Hb_000753_160 0.0925085189 - - PREDICTED: uncharacterized protein LOC105640669 [Jatropha curcas]
14 Hb_001250_050 0.0927332185 - - PREDICTED: uncharacterized protein LOC105644623 isoform X1 [Jatropha curcas]
15 Hb_007545_010 0.0939922461 - - HIV-1 rev binding protein, hrbl, putative [Ricinus communis]
16 Hb_003209_130 0.0941966079 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
17 Hb_004375_110 0.0949428671 - - PREDICTED: probable ATP-dependent RNA helicase DHX37 [Jatropha curcas]
18 Hb_116349_120 0.0951248373 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial isoform X1 [Jatropha curcas]
19 Hb_001799_160 0.0957000081 - - PREDICTED: protein VASCULAR ASSOCIATED DEATH 1, chloroplastic isoform X2 [Jatropha curcas]
20 Hb_004531_150 0.0964936558 - - PREDICTED: peroxisome biogenesis protein 2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002272_240 Hb_002272_240 Hb_013726_050 Hb_013726_050 Hb_002272_240--Hb_013726_050 Hb_001691_040 Hb_001691_040 Hb_002272_240--Hb_001691_040 Hb_007919_110 Hb_007919_110 Hb_002272_240--Hb_007919_110 Hb_006120_050 Hb_006120_050 Hb_002272_240--Hb_006120_050 Hb_002304_050 Hb_002304_050 Hb_002272_240--Hb_002304_050 Hb_001754_020 Hb_001754_020 Hb_002272_240--Hb_001754_020 Hb_013726_050--Hb_002304_050 Hb_005741_040 Hb_005741_040 Hb_013726_050--Hb_005741_040 Hb_002687_180 Hb_002687_180 Hb_013726_050--Hb_002687_180 Hb_002445_030 Hb_002445_030 Hb_013726_050--Hb_002445_030 Hb_116349_120 Hb_116349_120 Hb_013726_050--Hb_116349_120 Hb_003975_010 Hb_003975_010 Hb_001691_040--Hb_003975_010 Hb_000912_100 Hb_000912_100 Hb_001691_040--Hb_000912_100 Hb_001691_040--Hb_001754_020 Hb_000395_040 Hb_000395_040 Hb_001691_040--Hb_000395_040 Hb_002876_210 Hb_002876_210 Hb_001691_040--Hb_002876_210 Hb_003449_100 Hb_003449_100 Hb_007919_110--Hb_003449_100 Hb_000753_160 Hb_000753_160 Hb_007919_110--Hb_000753_160 Hb_012760_030 Hb_012760_030 Hb_007919_110--Hb_012760_030 Hb_003209_130 Hb_003209_130 Hb_007919_110--Hb_003209_130 Hb_007919_110--Hb_006120_050 Hb_011310_110 Hb_011310_110 Hb_006120_050--Hb_011310_110 Hb_030982_010 Hb_030982_010 Hb_006120_050--Hb_030982_010 Hb_010672_020 Hb_010672_020 Hb_006120_050--Hb_010672_020 Hb_006120_050--Hb_002687_180 Hb_121089_030 Hb_121089_030 Hb_006120_050--Hb_121089_030 Hb_002304_050--Hb_000753_160 Hb_002304_050--Hb_002687_180 Hb_002304_050--Hb_003449_100 Hb_001250_050 Hb_001250_050 Hb_002304_050--Hb_001250_050 Hb_001754_020--Hb_003975_010 Hb_021576_070 Hb_021576_070 Hb_001754_020--Hb_021576_070 Hb_001754_020--Hb_010672_020 Hb_001754_020--Hb_116349_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.35682 7.19905 9.75261 12.3924 3.73592 2.73049
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.46313 3.33336 4.36363 4.20538 7.80386

CAGE analysis