Hb_002272_260

Information

Type -
Description -
Location Contig2272: 156303-157013
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23698: 150272-157053
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002272_260 0.0 - - -
2 Hb_000771_100 0.068116764 - - Os06g0527300 [Oryza sativa Japonica Group]
3 Hb_004453_150 0.0819029783 - - BnaC02g13240D [Brassica napus]
4 Hb_000676_290 0.0868957693 - - PREDICTED: glutaredoxin-C3 [Jatropha curcas]
5 Hb_002301_280 0.0906647638 transcription factor TF Family: SBP hypothetical protein JCGZ_21462 [Jatropha curcas]
6 Hb_002259_150 0.0913126468 - - BnaC04g40780D [Brassica napus]
7 Hb_011174_010 0.0933882538 - - hypothetical protein JCGZ_10122 [Jatropha curcas]
8 Hb_004724_100 0.0977761729 - - 60S ribosomal protein L10aA [Hevea brasiliensis]
9 Hb_000101_090 0.0984569678 - - PREDICTED: ferredoxin-thioredoxin reductase catalytic chain, chloroplastic [Camelina sativa]
10 Hb_000155_180 0.0994027704 - - PREDICTED: 28 kDa heat- and acid-stable phosphoprotein [Jatropha curcas]
11 Hb_004143_110 0.1017267759 - - PREDICTED: uncharacterized protein LOC105630719 isoform X2 [Jatropha curcas]
12 Hb_009543_030 0.1021560157 - - prefoldin subunit 1 [Jatropha curcas]
13 Hb_025193_050 0.1034166129 - - PREDICTED: uncharacterized protein LOC105647290 isoform X1 [Jatropha curcas]
14 Hb_001269_320 0.1041616611 - - 40S ribosomal protein S12A [Hevea brasiliensis]
15 Hb_004374_200 0.1052989876 - - putative GMP synthase [Oxybasis rubra]
16 Hb_086703_010 0.1068834396 - - PREDICTED: F-box protein At5g52880 [Jatropha curcas]
17 Hb_102156_010 0.1078198154 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000193_350 0.1102963428 - - eukaryotic translation initiation factor 5A isoform VI [Hevea brasiliensis]
19 Hb_005389_150 0.1104024015 - - conserved hypothetical protein [Ricinus communis]
20 Hb_003874_020 0.111123876 - - hypothetical protein POPTR_0012s02280g [Populus trichocarpa]

Gene co-expression network

sample Hb_002272_260 Hb_002272_260 Hb_000771_100 Hb_000771_100 Hb_002272_260--Hb_000771_100 Hb_004453_150 Hb_004453_150 Hb_002272_260--Hb_004453_150 Hb_000676_290 Hb_000676_290 Hb_002272_260--Hb_000676_290 Hb_002301_280 Hb_002301_280 Hb_002272_260--Hb_002301_280 Hb_002259_150 Hb_002259_150 Hb_002272_260--Hb_002259_150 Hb_011174_010 Hb_011174_010 Hb_002272_260--Hb_011174_010 Hb_000155_180 Hb_000155_180 Hb_000771_100--Hb_000155_180 Hb_000347_340 Hb_000347_340 Hb_000771_100--Hb_000347_340 Hb_086703_010 Hb_086703_010 Hb_000771_100--Hb_086703_010 Hb_000620_080 Hb_000620_080 Hb_000771_100--Hb_000620_080 Hb_000771_100--Hb_000676_290 Hb_015057_010 Hb_015057_010 Hb_004453_150--Hb_015057_010 Hb_011161_040 Hb_011161_040 Hb_004453_150--Hb_011161_040 Hb_025193_050 Hb_025193_050 Hb_004453_150--Hb_025193_050 Hb_007193_100 Hb_007193_100 Hb_004453_150--Hb_007193_100 Hb_000175_070 Hb_000175_070 Hb_004453_150--Hb_000175_070 Hb_000024_080 Hb_000024_080 Hb_000676_290--Hb_000024_080 Hb_000087_020 Hb_000087_020 Hb_000676_290--Hb_000087_020 Hb_005398_030 Hb_005398_030 Hb_000676_290--Hb_005398_030 Hb_010180_020 Hb_010180_020 Hb_000676_290--Hb_010180_020 Hb_071130_030 Hb_071130_030 Hb_000676_290--Hb_071130_030 Hb_002112_040 Hb_002112_040 Hb_000676_290--Hb_002112_040 Hb_005389_150 Hb_005389_150 Hb_002301_280--Hb_005389_150 Hb_137403_010 Hb_137403_010 Hb_002301_280--Hb_137403_010 Hb_002107_160 Hb_002107_160 Hb_002301_280--Hb_002107_160 Hb_007101_100 Hb_007101_100 Hb_002301_280--Hb_007101_100 Hb_001009_040 Hb_001009_040 Hb_002301_280--Hb_001009_040 Hb_007317_060 Hb_007317_060 Hb_002259_150--Hb_007317_060 Hb_102156_010 Hb_102156_010 Hb_002259_150--Hb_102156_010 Hb_100777_010 Hb_100777_010 Hb_002259_150--Hb_100777_010 Hb_002259_150--Hb_004453_150 Hb_000193_350 Hb_000193_350 Hb_002259_150--Hb_000193_350 Hb_000622_100 Hb_000622_100 Hb_011174_010--Hb_000622_100 Hb_004117_180 Hb_004117_180 Hb_011174_010--Hb_004117_180 Hb_011016_090 Hb_011016_090 Hb_011174_010--Hb_011016_090 Hb_073367_010 Hb_073367_010 Hb_011174_010--Hb_073367_010 Hb_011174_010--Hb_000771_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.1016 1.76461 2.58964 6.05166 7.76625 21.9408
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.174 14.0972 5.64669 4.56546 1.85631

CAGE analysis