Hb_002272_270

Information

Type -
Description -
Location Contig2272: 157471-165087
Sequence    

Annotation

kegg
ID pop:POPTR_0013s02780g
description hypothetical protein
nr
ID XP_006375779.1
description hypothetical protein POPTR_0013s02780g [Populus trichocarpa]
swissprot
ID O23732
description Glutathione synthetase, chloroplastic OS=Brassica juncea GN=GSH2 PE=2 SV=1
trembl
ID U5FUH4
description Glutathione synthetase OS=Populus trichocarpa GN=POPTR_0013s02780g PE=3 SV=1
Gene Ontology
ID GO:0005829
description glutathione chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23698: 150272-157053 , PASA_asmbl_23701: 162675-163173 , PASA_asmbl_23702: 159971-165059 , PASA_asmbl_23703: 162713-163168 , PASA_asmbl_23705: 163811-163997
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002272_270 0.0 - - hypothetical protein POPTR_0013s02780g [Populus trichocarpa]
2 Hb_000840_200 0.0613151468 - - PREDICTED: carbamoyl-phosphate synthase small chain, chloroplastic-like [Jatropha curcas]
3 Hb_000179_270 0.0747597523 - - hypothetical protein JCGZ_07444 [Jatropha curcas]
4 Hb_000087_070 0.0763260433 - - PREDICTED: probable arabinosyltransferase ARAD1 [Jatropha curcas]
5 Hb_015675_040 0.0799291369 - - PREDICTED: ribose-phosphate pyrophosphokinase 1 [Jatropha curcas]
6 Hb_005288_130 0.0811428655 - - protein with unknown function [Ricinus communis]
7 Hb_157023_020 0.0854614488 - - nucleic acid binding protein, putative [Ricinus communis]
8 Hb_000398_060 0.0856170389 - - PREDICTED: survival of motor neuron-related-splicing factor 30 [Jatropha curcas]
9 Hb_003878_150 0.0866249992 - - PREDICTED: GPI mannosyltransferase 3 [Jatropha curcas]
10 Hb_002303_020 0.0887167626 - - PREDICTED: lysine--tRNA ligase-like [Gossypium raimondii]
11 Hb_001728_040 0.0891800869 - - Aconitase/3-isopropylmalate dehydratase protein [Theobroma cacao]
12 Hb_000363_190 0.0896499671 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM22-2-like isoform X1 [Jatropha curcas]
13 Hb_001821_110 0.0907402178 - - PREDICTED: ubiquinol oxidase, mitochondrial [Jatropha curcas]
14 Hb_000069_720 0.0914513832 - - PREDICTED: exosome complex component RRP41-like [Jatropha curcas]
15 Hb_000080_130 0.0914852545 - - PREDICTED: TBC1 domain family member 22B [Jatropha curcas]
16 Hb_012733_040 0.0933233037 - - ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis]
17 Hb_001269_130 0.094253811 - - plant poly(A)+ RNA export protein, putative [Ricinus communis]
18 Hb_000367_090 0.0961243997 - - PREDICTED: plant intracellular Ras-group-related LRR protein 7 [Jatropha curcas]
19 Hb_000035_160 0.0963919469 - - PREDICTED: formin-like protein 18 [Jatropha curcas]
20 Hb_000167_010 0.0966448562 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002272_270 Hb_002272_270 Hb_000840_200 Hb_000840_200 Hb_002272_270--Hb_000840_200 Hb_000179_270 Hb_000179_270 Hb_002272_270--Hb_000179_270 Hb_000087_070 Hb_000087_070 Hb_002272_270--Hb_000087_070 Hb_015675_040 Hb_015675_040 Hb_002272_270--Hb_015675_040 Hb_005288_130 Hb_005288_130 Hb_002272_270--Hb_005288_130 Hb_157023_020 Hb_157023_020 Hb_002272_270--Hb_157023_020 Hb_002303_020 Hb_002303_020 Hb_000840_200--Hb_002303_020 Hb_003878_090 Hb_003878_090 Hb_000840_200--Hb_003878_090 Hb_000840_200--Hb_157023_020 Hb_000069_720 Hb_000069_720 Hb_000840_200--Hb_000069_720 Hb_000840_200--Hb_015675_040 Hb_000179_270--Hb_000087_070 Hb_002820_020 Hb_002820_020 Hb_000179_270--Hb_002820_020 Hb_001189_070 Hb_001189_070 Hb_000179_270--Hb_001189_070 Hb_002042_150 Hb_002042_150 Hb_000179_270--Hb_002042_150 Hb_001269_190 Hb_001269_190 Hb_000179_270--Hb_001269_190 Hb_004607_090 Hb_004607_090 Hb_000087_070--Hb_004607_090 Hb_000087_070--Hb_001269_190 Hb_000087_070--Hb_000840_200 Hb_003878_150 Hb_003878_150 Hb_000087_070--Hb_003878_150 Hb_000080_130 Hb_000080_130 Hb_015675_040--Hb_000080_130 Hb_158530_020 Hb_158530_020 Hb_015675_040--Hb_158530_020 Hb_005976_080 Hb_005976_080 Hb_015675_040--Hb_005976_080 Hb_011224_050 Hb_011224_050 Hb_015675_040--Hb_011224_050 Hb_000185_220 Hb_000185_220 Hb_015675_040--Hb_000185_220 Hb_000398_060 Hb_000398_060 Hb_005288_130--Hb_000398_060 Hb_000116_490 Hb_000116_490 Hb_005288_130--Hb_000116_490 Hb_163175_010 Hb_163175_010 Hb_005288_130--Hb_163175_010 Hb_005288_130--Hb_000840_200 Hb_065525_080 Hb_065525_080 Hb_005288_130--Hb_065525_080 Hb_000663_060 Hb_000663_060 Hb_005288_130--Hb_000663_060 Hb_002572_020 Hb_002572_020 Hb_157023_020--Hb_002572_020 Hb_073973_090 Hb_073973_090 Hb_157023_020--Hb_073973_090 Hb_000375_390 Hb_000375_390 Hb_157023_020--Hb_000375_390 Hb_000023_260 Hb_000023_260 Hb_157023_020--Hb_000023_260 Hb_000603_160 Hb_000603_160 Hb_157023_020--Hb_000603_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.56507 6.59192 12.446 16.0507 4.73206 8.26399
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.1375 14.6583 5.31604 12.3556 14.2625

CAGE analysis