Hb_002272_280

Information

Type -
Description -
Location Contig2272: 165284-168389
Sequence    

Annotation

kegg
ID rcu:RCOM_1430270
description phosphoglycerate mutase, putative
nr
ID XP_002512328.1
description phosphoglycerate mutase, putative [Ricinus communis]
swissprot
ID Q9MAA2
description Phosphoglycerate mutase-like protein AT74 OS=Arabidopsis thaliana GN=At3g05170 PE=2 SV=1
trembl
ID B9RF09
description Phosphoglycerate mutase, putative OS=Ricinus communis GN=RCOM_1430270 PE=4 SV=1
Gene Ontology
ID GO:0003824
description phosphoglycerate mutase-like protein at74

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23706: 165315-168366 , PASA_asmbl_23708: 167121-167556
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002272_280 0.0 - - phosphoglycerate mutase, putative [Ricinus communis]
2 Hb_009646_040 0.1575438138 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
3 Hb_011377_050 0.1579799792 - - PREDICTED: E3 ubiquitin-protein ligase At3g02290-like isoform X1 [Jatropha curcas]
4 Hb_000019_070 0.1587670294 - - PREDICTED: uncharacterized protein LOC105630200 [Jatropha curcas]
5 Hb_000638_170 0.172659655 - - PREDICTED: ras-related protein RABC1 [Jatropha curcas]
6 Hb_000161_060 0.1786777539 - - PREDICTED: probable magnesium transporter NIPA4 [Jatropha curcas]
7 Hb_000521_130 0.1805822586 - - PREDICTED: citrate synthase, mitochondrial [Jatropha curcas]
8 Hb_002194_090 0.183217862 - - nucleic acid binding protein, putative [Ricinus communis]
9 Hb_000297_040 0.1837240032 - - pre-mRNA cleavage factor im, 25kD subunit, putative [Ricinus communis]
10 Hb_001377_420 0.1843423794 - - conserved hypothetical protein [Ricinus communis]
11 Hb_009486_020 0.1846779049 - - nucleoside diphosphate kinase 1 [Hevea brasiliensis]
12 Hb_003894_080 0.1856014013 - - PREDICTED: protein cornichon homolog 4 [Vitis vinifera]
13 Hb_158092_010 0.1858900199 - - CYP51 [Hevea brasiliensis]
14 Hb_000130_050 0.1870484065 - - 14-3-3 protein, putative [Ricinus communis]
15 Hb_000292_060 0.1875927539 - - transporter, putative [Ricinus communis]
16 Hb_000066_090 0.1891325669 - - PREDICTED: pyruvate kinase, cytosolic isozyme-like [Jatropha curcas]
17 Hb_000138_170 0.1897692643 - - putative plastid-lipid-associated protein, partial [Hevea brasiliensis]
18 Hb_145880_020 0.1909280385 - - PREDICTED: proteasome subunit alpha type-4 [Jatropha curcas]
19 Hb_000629_120 0.1917994911 - - Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Theobroma cacao]
20 Hb_075247_010 0.1921296406 - - PREDICTED: actin-depolymerizing factor 2-like [Nelumbo nucifera]

Gene co-expression network

sample Hb_002272_280 Hb_002272_280 Hb_009646_040 Hb_009646_040 Hb_002272_280--Hb_009646_040 Hb_011377_050 Hb_011377_050 Hb_002272_280--Hb_011377_050 Hb_000019_070 Hb_000019_070 Hb_002272_280--Hb_000019_070 Hb_000638_170 Hb_000638_170 Hb_002272_280--Hb_000638_170 Hb_000161_060 Hb_000161_060 Hb_002272_280--Hb_000161_060 Hb_000521_130 Hb_000521_130 Hb_002272_280--Hb_000521_130 Hb_000629_120 Hb_000629_120 Hb_009646_040--Hb_000629_120 Hb_009646_040--Hb_000161_060 Hb_000482_020 Hb_000482_020 Hb_009646_040--Hb_000482_020 Hb_017110_010 Hb_017110_010 Hb_009646_040--Hb_017110_010 Hb_001700_030 Hb_001700_030 Hb_009646_040--Hb_001700_030 Hb_092337_010 Hb_092337_010 Hb_009646_040--Hb_092337_010 Hb_000483_390 Hb_000483_390 Hb_011377_050--Hb_000483_390 Hb_114310_080 Hb_114310_080 Hb_011377_050--Hb_114310_080 Hb_011377_050--Hb_000019_070 Hb_000140_050 Hb_000140_050 Hb_011377_050--Hb_000140_050 Hb_006472_050 Hb_006472_050 Hb_011377_050--Hb_006472_050 Hb_003540_030 Hb_003540_030 Hb_011377_050--Hb_003540_030 Hb_003207_170 Hb_003207_170 Hb_000019_070--Hb_003207_170 Hb_000019_070--Hb_114310_080 Hb_000019_070--Hb_000483_390 Hb_000392_380 Hb_000392_380 Hb_000019_070--Hb_000392_380 Hb_003671_020 Hb_003671_020 Hb_000019_070--Hb_003671_020 Hb_009486_020 Hb_009486_020 Hb_000638_170--Hb_009486_020 Hb_002303_060 Hb_002303_060 Hb_000638_170--Hb_002303_060 Hb_000336_240 Hb_000336_240 Hb_000638_170--Hb_000336_240 Hb_000638_170--Hb_114310_080 Hb_000638_170--Hb_000483_390 Hb_000805_240 Hb_000805_240 Hb_000638_170--Hb_000805_240 Hb_000161_060--Hb_000629_120 Hb_001205_150 Hb_001205_150 Hb_000161_060--Hb_001205_150 Hb_010174_020 Hb_010174_020 Hb_000161_060--Hb_010174_020 Hb_000692_220 Hb_000692_220 Hb_000161_060--Hb_000692_220 Hb_000985_060 Hb_000985_060 Hb_000161_060--Hb_000985_060 Hb_000161_060--Hb_092337_010 Hb_000212_450 Hb_000212_450 Hb_000521_130--Hb_000212_450 Hb_000252_100 Hb_000252_100 Hb_000521_130--Hb_000252_100 Hb_000140_380 Hb_000140_380 Hb_000521_130--Hb_000140_380 Hb_004800_100 Hb_004800_100 Hb_000521_130--Hb_004800_100 Hb_017131_010 Hb_017131_010 Hb_000521_130--Hb_017131_010 Hb_000173_410 Hb_000173_410 Hb_000521_130--Hb_000173_410
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.42996 2.07004 3.1801 22.473 3.71455 3.84389
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.58686 14.3175 25.2676 3.32135 2.63422

CAGE analysis