Hb_002273_050

Information

Type -
Description -
Location Contig2273: 59963-61336
Sequence    

Annotation

kegg
ID tcc:TCM_041132
description Pyridine nucleotide-disulfide oxidoreductase family protein
nr
ID XP_012066292.1
description PREDICTED: geranylgeranyl diphosphate reductase, chloroplastic-like [Jatropha curcas]
swissprot
ID Q9CA67
description Geranylgeranyl diphosphate reductase, chloroplastic OS=Arabidopsis thaliana GN=CHLP PE=1 SV=1
trembl
ID A0A067L372
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23853 PE=4 SV=1
Gene Ontology
ID GO:0016628
description geranylgeranyl diphosphate chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002273_050 0.0 - - PREDICTED: geranylgeranyl diphosphate reductase, chloroplastic-like [Jatropha curcas]
2 Hb_002273_080 0.0749684892 - - geranylgeranyl reductase [Monoraphidium neglectum]
3 Hb_000215_410 0.1132030514 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 20 [Jatropha curcas]
4 Hb_000836_120 0.1153202979 - - syntaxin, putative [Ricinus communis]
5 Hb_001269_690 0.12358388 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002686_280 0.1287801255 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
7 Hb_129204_060 0.1395211895 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 20 [Jatropha curcas]
8 Hb_002235_240 0.1471753073 - - xenotropic and polytropic murine leukemia virus receptor ids-4, putative [Ricinus communis]
9 Hb_000261_190 0.1538143584 - - PREDICTED: uncharacterized protein At4g04980-like [Jatropha curcas]
10 Hb_000140_410 0.1601986815 - - PREDICTED: uncharacterized protein At5g41620 isoform X1 [Jatropha curcas]
11 Hb_002609_090 0.1666824738 - - PREDICTED: phosphomethylpyrimidine synthase, chloroplastic isoform X2 [Jatropha curcas]
12 Hb_003623_070 0.1698918592 - - ubiquitin-protein ligase, putative [Ricinus communis]
13 Hb_000853_030 0.1738180846 - - sucrose synthase 2 [Hevea brasiliensis]
14 Hb_003849_260 0.1765340143 - - PREDICTED: uncharacterized protein LOC105644666 [Jatropha curcas]
15 Hb_001269_040 0.1775018021 - - ABC transporter family protein [Hevea brasiliensis]
16 Hb_011930_070 0.178876491 - - PREDICTED: probable AMP deaminase [Jatropha curcas]
17 Hb_000390_100 0.1857166818 - - alpha-hydroxynitrile lyase family protein [Populus trichocarpa]
18 Hb_006026_010 0.1871521807 - - PREDICTED: cyclin-dependent kinase inhibitor 3-like [Jatropha curcas]
19 Hb_000200_280 0.1882329881 - - PREDICTED: uncharacterized protein LOC105636924 [Jatropha curcas]
20 Hb_001225_090 0.1883587248 transcription factor TF Family: RWP-RK transcription factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_002273_050 Hb_002273_050 Hb_002273_080 Hb_002273_080 Hb_002273_050--Hb_002273_080 Hb_000215_410 Hb_000215_410 Hb_002273_050--Hb_000215_410 Hb_000836_120 Hb_000836_120 Hb_002273_050--Hb_000836_120 Hb_001269_690 Hb_001269_690 Hb_002273_050--Hb_001269_690 Hb_002686_280 Hb_002686_280 Hb_002273_050--Hb_002686_280 Hb_129204_060 Hb_129204_060 Hb_002273_050--Hb_129204_060 Hb_002273_080--Hb_000215_410 Hb_002273_080--Hb_002686_280 Hb_002273_080--Hb_129204_060 Hb_002273_080--Hb_001269_690 Hb_001269_040 Hb_001269_040 Hb_002273_080--Hb_001269_040 Hb_000215_410--Hb_129204_060 Hb_002235_240 Hb_002235_240 Hb_000215_410--Hb_002235_240 Hb_000215_410--Hb_000836_120 Hb_000215_410--Hb_001269_690 Hb_000836_120--Hb_002235_240 Hb_000836_120--Hb_129204_060 Hb_003849_260 Hb_003849_260 Hb_000836_120--Hb_003849_260 Hb_001638_040 Hb_001638_040 Hb_000836_120--Hb_001638_040 Hb_000140_410 Hb_000140_410 Hb_001269_690--Hb_000140_410 Hb_000200_280 Hb_000200_280 Hb_001269_690--Hb_000200_280 Hb_001529_050 Hb_001529_050 Hb_001269_690--Hb_001529_050 Hb_000227_060 Hb_000227_060 Hb_001269_690--Hb_000227_060 Hb_001104_240 Hb_001104_240 Hb_001269_690--Hb_001104_240 Hb_002686_280--Hb_002235_240 Hb_002686_280--Hb_001269_040 Hb_042175_010 Hb_042175_010 Hb_002686_280--Hb_042175_010 Hb_002686_280--Hb_003849_260 Hb_129204_060--Hb_002235_240 Hb_005656_140 Hb_005656_140 Hb_129204_060--Hb_005656_140 Hb_129204_060--Hb_002686_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.15645 14.6549 0.294906 1.33267 3.2181 3.73731
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.21263 2.09422 1.37477 7.90256 0.34007

CAGE analysis