Hb_002273_080

Information

Type -
Description -
Location Contig2273: 77943-79296
Sequence    

Annotation

kegg
ID vvi:104878134
description UPF0001 protein YBL036C-like
nr
ID KIY96474.1
description geranylgeranyl reductase [Monoraphidium neglectum]
swissprot
ID Q0W349
description Digeranylgeranylglycerophospholipid reductase OS=Uncultured methanogenic archaeon RC-I GN=UNCMA_10520 PE=3 SV=1
trembl
ID A0A0D2LYJ5
description Strain SAG 48.87 unplaced genomic scaffold scaffold02767, whole genome shotgun sequence OS=Monoraphidium neglectum GN=MNEG_11486 PE=4 SV=1
Gene Ontology
ID GO:0016491
description geranylgeranyl diphosphate chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23711: 78064-78564
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002273_080 0.0 - - geranylgeranyl reductase [Monoraphidium neglectum]
2 Hb_002273_050 0.0749684892 - - PREDICTED: geranylgeranyl diphosphate reductase, chloroplastic-like [Jatropha curcas]
3 Hb_000215_410 0.1244593363 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 20 [Jatropha curcas]
4 Hb_002686_280 0.1289568568 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
5 Hb_129204_060 0.1560637 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 20 [Jatropha curcas]
6 Hb_001269_690 0.1611038877 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001269_040 0.1646693678 - - ABC transporter family protein [Hevea brasiliensis]
8 Hb_002235_240 0.1686632186 - - xenotropic and polytropic murine leukemia virus receptor ids-4, putative [Ricinus communis]
9 Hb_000836_120 0.1695339127 - - syntaxin, putative [Ricinus communis]
10 Hb_003623_070 0.1738540382 - - ubiquitin-protein ligase, putative [Ricinus communis]
11 Hb_000140_410 0.1758621151 - - PREDICTED: uncharacterized protein At5g41620 isoform X1 [Jatropha curcas]
12 Hb_011930_070 0.1776173591 - - PREDICTED: probable AMP deaminase [Jatropha curcas]
13 Hb_000261_190 0.1843538195 - - PREDICTED: uncharacterized protein At4g04980-like [Jatropha curcas]
14 Hb_002609_090 0.1857872375 - - PREDICTED: phosphomethylpyrimidine synthase, chloroplastic isoform X2 [Jatropha curcas]
15 Hb_020805_170 0.1864995005 - - PREDICTED: F-box protein CPR30-like [Jatropha curcas]
16 Hb_000160_240 0.1910478753 - - PREDICTED: uncharacterized protein At1g66480 [Jatropha curcas]
17 Hb_005841_080 0.1912831332 - - hypothetical protein POPTR_0018s11370g [Populus trichocarpa]
18 Hb_005656_140 0.1920661025 transcription factor TF Family: bZIP PREDICTED: basic leucine zipper 9 [Jatropha curcas]
19 Hb_089920_010 0.1926172107 - - PREDICTED: LOW QUALITY PROTEIN: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
20 Hb_006026_010 0.1951816777 - - PREDICTED: cyclin-dependent kinase inhibitor 3-like [Jatropha curcas]

Gene co-expression network

sample Hb_002273_080 Hb_002273_080 Hb_002273_050 Hb_002273_050 Hb_002273_080--Hb_002273_050 Hb_000215_410 Hb_000215_410 Hb_002273_080--Hb_000215_410 Hb_002686_280 Hb_002686_280 Hb_002273_080--Hb_002686_280 Hb_129204_060 Hb_129204_060 Hb_002273_080--Hb_129204_060 Hb_001269_690 Hb_001269_690 Hb_002273_080--Hb_001269_690 Hb_001269_040 Hb_001269_040 Hb_002273_080--Hb_001269_040 Hb_002273_050--Hb_000215_410 Hb_000836_120 Hb_000836_120 Hb_002273_050--Hb_000836_120 Hb_002273_050--Hb_001269_690 Hb_002273_050--Hb_002686_280 Hb_002273_050--Hb_129204_060 Hb_000215_410--Hb_129204_060 Hb_002235_240 Hb_002235_240 Hb_000215_410--Hb_002235_240 Hb_000215_410--Hb_000836_120 Hb_000215_410--Hb_001269_690 Hb_002686_280--Hb_002235_240 Hb_002686_280--Hb_001269_040 Hb_042175_010 Hb_042175_010 Hb_002686_280--Hb_042175_010 Hb_003849_260 Hb_003849_260 Hb_002686_280--Hb_003849_260 Hb_129204_060--Hb_002235_240 Hb_129204_060--Hb_000836_120 Hb_005656_140 Hb_005656_140 Hb_129204_060--Hb_005656_140 Hb_129204_060--Hb_002686_280 Hb_000140_410 Hb_000140_410 Hb_001269_690--Hb_000140_410 Hb_000200_280 Hb_000200_280 Hb_001269_690--Hb_000200_280 Hb_001529_050 Hb_001529_050 Hb_001269_690--Hb_001529_050 Hb_000227_060 Hb_000227_060 Hb_001269_690--Hb_000227_060 Hb_001104_240 Hb_001104_240 Hb_001269_690--Hb_001104_240 Hb_001269_040--Hb_002273_050 Hb_012404_040 Hb_012404_040 Hb_001269_040--Hb_012404_040 Hb_001338_050 Hb_001338_050 Hb_001269_040--Hb_001338_050 Hb_025194_010 Hb_025194_010 Hb_001269_040--Hb_025194_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.2462 8.60872 0.212329 0.553941 1.59813 2.01
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.853935 0.963821 0.98155 4.95422 0.364112

CAGE analysis