Hb_002273_090

Information

Type -
Description -
Location Contig2273: 77972-78535
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002273_090 0.0 - - -
2 Hb_002273_060 0.1769751285 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001635_050 0.1917243286 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial [Nicotiana sylvestris]
4 Hb_009848_040 0.1976170463 - - hypothetical protein B456_009G349600 [Gossypium raimondii]
5 Hb_009848_030 0.2137993146 - - long-chain-fatty-acid CoA ligase, putative [Ricinus communis]
6 Hb_002273_050 0.2296552863 - - PREDICTED: geranylgeranyl diphosphate reductase, chloroplastic-like [Jatropha curcas]
7 Hb_002273_080 0.2389622645 - - geranylgeranyl reductase [Monoraphidium neglectum]
8 Hb_000787_190 0.2395135032 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter B family member 15-like [Jatropha curcas]
9 Hb_001269_690 0.2614950824 - - conserved hypothetical protein [Ricinus communis]
10 Hb_027445_050 0.2625013461 - - PREDICTED: titin isoform X13 [Jatropha curcas]
11 Hb_001524_090 0.2647594918 - - PREDICTED: uncharacterized protein LOC105113929 [Populus euphratica]
12 Hb_002686_280 0.2664199622 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
13 Hb_134894_010 0.2700342256 - - PREDICTED: E3 ubiquitin-protein ligase UPL5-like isoform X2 [Gossypium raimondii]
14 Hb_002235_140 0.2707308012 - - conserved hypothetical protein [Ricinus communis]
15 Hb_009848_010 0.2707818523 - - putative acyl-activating enzyme 16, chloroplastic -like protein [Gossypium arboreum]
16 Hb_012423_010 0.2727836104 - - -
17 Hb_112023_010 0.275081721 - - hypothetical protein EUGRSUZ_C03826 [Eucalyptus grandis]
18 Hb_003623_070 0.2755297152 - - ubiquitin-protein ligase, putative [Ricinus communis]
19 Hb_002903_130 0.2756912227 - - epoxide hydrolase, putative [Ricinus communis]
20 Hb_006586_030 0.2763137493 - - PREDICTED: transcription factor LHW isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002273_090 Hb_002273_090 Hb_002273_060 Hb_002273_060 Hb_002273_090--Hb_002273_060 Hb_001635_050 Hb_001635_050 Hb_002273_090--Hb_001635_050 Hb_009848_040 Hb_009848_040 Hb_002273_090--Hb_009848_040 Hb_009848_030 Hb_009848_030 Hb_002273_090--Hb_009848_030 Hb_002273_050 Hb_002273_050 Hb_002273_090--Hb_002273_050 Hb_002273_080 Hb_002273_080 Hb_002273_090--Hb_002273_080 Hb_002273_060--Hb_001635_050 Hb_004788_040 Hb_004788_040 Hb_002273_060--Hb_004788_040 Hb_006586_030 Hb_006586_030 Hb_002273_060--Hb_006586_030 Hb_002273_060--Hb_009848_030 Hb_002273_060--Hb_009848_040 Hb_003623_070 Hb_003623_070 Hb_001635_050--Hb_003623_070 Hb_001635_050--Hb_004788_040 Hb_001635_050--Hb_002273_080 Hb_001635_050--Hb_002273_050 Hb_012423_010 Hb_012423_010 Hb_009848_040--Hb_012423_010 Hb_084429_010 Hb_084429_010 Hb_009848_040--Hb_084429_010 Hb_009848_040--Hb_009848_030 Hb_004096_080 Hb_004096_080 Hb_009848_040--Hb_004096_080 Hb_002235_140 Hb_002235_140 Hb_009848_040--Hb_002235_140 Hb_006588_150 Hb_006588_150 Hb_009848_040--Hb_006588_150 Hb_000032_310 Hb_000032_310 Hb_009848_030--Hb_000032_310 Hb_001989_020 Hb_001989_020 Hb_009848_030--Hb_001989_020 Hb_001396_260 Hb_001396_260 Hb_009848_030--Hb_001396_260 Hb_000521_170 Hb_000521_170 Hb_009848_030--Hb_000521_170 Hb_003656_120 Hb_003656_120 Hb_009848_030--Hb_003656_120 Hb_002273_050--Hb_002273_080 Hb_000215_410 Hb_000215_410 Hb_002273_050--Hb_000215_410 Hb_000836_120 Hb_000836_120 Hb_002273_050--Hb_000836_120 Hb_001269_690 Hb_001269_690 Hb_002273_050--Hb_001269_690 Hb_002686_280 Hb_002686_280 Hb_002273_050--Hb_002686_280 Hb_129204_060 Hb_129204_060 Hb_002273_050--Hb_129204_060 Hb_002273_080--Hb_000215_410 Hb_002273_080--Hb_002686_280 Hb_002273_080--Hb_129204_060 Hb_002273_080--Hb_001269_690 Hb_001269_040 Hb_001269_040 Hb_002273_080--Hb_001269_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.636155 5.41272 0.2032 0.436447 1.39756 3.67947
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.21295 0.59549 0 5.23807 0

CAGE analysis