Hb_002273_120

Information

Type -
Description -
Location Contig2273: 184886-204947
Sequence    

Annotation

kegg
ID pop:POPTR_0009s15920g
description POPTRDRAFT_878226; hypothetical protein
nr
ID XP_012066293.1
description PREDICTED: probable apyrase 6 [Jatropha curcas]
swissprot
ID O80612
description Probable apyrase 6 OS=Arabidopsis thaliana GN=APY6 PE=2 SV=2
trembl
ID A0A067L3B5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23854 PE=4 SV=1
Gene Ontology
ID GO:0016787
description probable apyrase 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23713: 188208-189771 , PASA_asmbl_23714: 184930-204896 , PASA_asmbl_23715: 194287-204909 , PASA_asmbl_23716: 190137-190465
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002273_120 0.0 - - PREDICTED: probable apyrase 6 [Jatropha curcas]
2 Hb_009529_030 0.0502109941 - - PREDICTED: transmembrane protein 120 homolog [Jatropha curcas]
3 Hb_002785_050 0.0665131618 - - PREDICTED: adenylosuccinate lyase-like [Jatropha curcas]
4 Hb_003010_020 0.067234594 - - PREDICTED: probable inactive heme oxygenase 2, chloroplastic isoform X1 [Jatropha curcas]
5 Hb_032050_040 0.0676375633 - - PREDICTED: protein S-acyltransferase 8-like [Jatropha curcas]
6 Hb_003375_070 0.0693403857 - - PREDICTED: alkylated DNA repair protein alkB homolog 8 [Jatropha curcas]
7 Hb_017295_010 0.0723432176 - - PREDICTED: uncharacterized membrane protein At1g06890 [Jatropha curcas]
8 Hb_002073_190 0.0774075426 - - PREDICTED: uncharacterized protein LOC105649812 isoform X1 [Jatropha curcas]
9 Hb_007919_100 0.0787388695 transcription factor TF Family: SET PREDICTED: uncharacterized protein LOC105635137 [Jatropha curcas]
10 Hb_012053_080 0.0801866423 - - AP-2 complex subunit alpha, putative [Ricinus communis]
11 Hb_007426_150 0.0802003231 - - PREDICTED: F-box protein At5g46170-like [Jatropha curcas]
12 Hb_001195_560 0.0810689101 - - PREDICTED: lysophospholipid acyltransferase LPEAT1 isoform X1 [Jatropha curcas]
13 Hb_001882_050 0.0812051739 - - hydroxysteroid dehydrogenase, putative [Ricinus communis]
14 Hb_003438_050 0.0819657487 - - PREDICTED: rab3 GTPase-activating protein catalytic subunit isoform X2 [Jatropha curcas]
15 Hb_002272_130 0.0823715398 - - PREDICTED: DNA excision repair protein ERCC-1 [Jatropha curcas]
16 Hb_000544_010 0.0832394207 - - PREDICTED: GPI mannosyltransferase 1 [Jatropha curcas]
17 Hb_028308_010 0.0845379114 - - PREDICTED: probable protein S-acyltransferase 4 isoform X1 [Jatropha curcas]
18 Hb_000139_370 0.0850602851 - - ubiquitin-activating enzyme E1c, putative [Ricinus communis]
19 Hb_017700_010 0.0854360067 - - PREDICTED: probable protein S-acyltransferase 15 [Jatropha curcas]
20 Hb_103012_010 0.0860374251 - - PREDICTED: uncharacterized protein LOC105638878 [Jatropha curcas]

Gene co-expression network

sample Hb_002273_120 Hb_002273_120 Hb_009529_030 Hb_009529_030 Hb_002273_120--Hb_009529_030 Hb_002785_050 Hb_002785_050 Hb_002273_120--Hb_002785_050 Hb_003010_020 Hb_003010_020 Hb_002273_120--Hb_003010_020 Hb_032050_040 Hb_032050_040 Hb_002273_120--Hb_032050_040 Hb_003375_070 Hb_003375_070 Hb_002273_120--Hb_003375_070 Hb_017295_010 Hb_017295_010 Hb_002273_120--Hb_017295_010 Hb_009529_030--Hb_017295_010 Hb_000362_150 Hb_000362_150 Hb_009529_030--Hb_000362_150 Hb_009529_030--Hb_002785_050 Hb_009529_030--Hb_032050_040 Hb_000345_360 Hb_000345_360 Hb_009529_030--Hb_000345_360 Hb_002785_050--Hb_032050_040 Hb_000830_030 Hb_000830_030 Hb_002785_050--Hb_000830_030 Hb_001882_050 Hb_001882_050 Hb_002785_050--Hb_001882_050 Hb_000260_330 Hb_000260_330 Hb_002785_050--Hb_000260_330 Hb_001416_070 Hb_001416_070 Hb_003010_020--Hb_001416_070 Hb_003010_020--Hb_032050_040 Hb_003438_050 Hb_003438_050 Hb_003010_020--Hb_003438_050 Hb_012194_050 Hb_012194_050 Hb_003010_020--Hb_012194_050 Hb_006909_070 Hb_006909_070 Hb_003010_020--Hb_006909_070 Hb_007919_100 Hb_007919_100 Hb_032050_040--Hb_007919_100 Hb_152202_010 Hb_152202_010 Hb_032050_040--Hb_152202_010 Hb_000127_040 Hb_000127_040 Hb_032050_040--Hb_000127_040 Hb_001135_220 Hb_001135_220 Hb_003375_070--Hb_001135_220 Hb_000139_370 Hb_000139_370 Hb_003375_070--Hb_000139_370 Hb_011930_160 Hb_011930_160 Hb_003375_070--Hb_011930_160 Hb_003025_110 Hb_003025_110 Hb_003375_070--Hb_003025_110 Hb_007632_240 Hb_007632_240 Hb_003375_070--Hb_007632_240 Hb_000107_210 Hb_000107_210 Hb_017295_010--Hb_000107_210 Hb_005227_010 Hb_005227_010 Hb_017295_010--Hb_005227_010 Hb_000008_270 Hb_000008_270 Hb_017295_010--Hb_000008_270 Hb_001109_060 Hb_001109_060 Hb_017295_010--Hb_001109_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.58 8.04465 10.87 16.1837 20.0193 20.5084
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.6765 8.22691 7.82966 12.8087 13.5097

CAGE analysis