Hb_002273_130

Information

Type -
Description -
Location Contig2273: 215065-223971
Sequence    

Annotation

kegg
ID tcc:TCM_001422
description TCP-1/cpn60 chaperonin family protein
nr
ID XP_012470269.1
description PREDICTED: T-complex protein 1 subunit eta [Gossypium raimondii]
swissprot
ID Q9SF16
description T-complex protein 1 subunit eta OS=Arabidopsis thaliana GN=CCT7 PE=1 SV=1
trembl
ID A0A0D2RI22
description Gossypium raimondii chromosome 3, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_003G068300 PE=4 SV=1
Gene Ontology
ID GO:0005524
description t-complex protein 1 subunit eta

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23717: 215171-223971 , PASA_asmbl_23718: 215727-216040
cDNA
(Sanger)
(ID:Location)		 014_I12.ab1: 215173-217027 , 052_P19.ab1: 215171-217058

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002273_130 0.0 - - PREDICTED: T-complex protein 1 subunit eta [Gossypium raimondii]
2 Hb_030131_040 0.0574114115 - - ribosome biogenesis protein tsr1, putative [Ricinus communis]
3 Hb_001341_120 0.0646616835 - - hypothetical protein B456_001G130300 [Gossypium raimondii]
4 Hb_001541_090 0.0666567734 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
5 Hb_000076_270 0.0696404464 - - PREDICTED: DDRGK domain-containing protein 1 [Populus euphratica]
6 Hb_000059_150 0.0698822936 - - Polynucleotidyl transferase, ribonuclease H-like superfamily protein isoform 2 [Theobroma cacao]
7 Hb_001300_070 0.0721493736 - - OTU domain-containing protein 6B, putative [Ricinus communis]
8 Hb_003464_020 0.0729520934 - - srpk, putative [Ricinus communis]
9 Hb_001085_320 0.0780414281 transcription factor TF Family: LUG WD-repeat protein, putative [Ricinus communis]
10 Hb_010381_060 0.0815793641 - - DEAD-box ATP-dependent RNA helicase 20 -like protein [Gossypium arboreum]
11 Hb_091384_010 0.08172966 - - hypothetical protein JCGZ_09207 [Jatropha curcas]
12 Hb_000059_140 0.083402264 - - rnase h, putative [Ricinus communis]
13 Hb_002477_130 0.0843286252 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002304_090 0.0846072899 - - PREDICTED: probable ATP-dependent RNA helicase DHX35 isoform X1 [Jatropha curcas]
15 Hb_000866_470 0.0847248006 - - PREDICTED: uncharacterized protein LOC105643015 [Jatropha curcas]
16 Hb_103012_010 0.0850735625 - - PREDICTED: uncharacterized protein LOC105638878 [Jatropha curcas]
17 Hb_001488_410 0.0853994995 - - PREDICTED: eukaryotic translation initiation factor 3 subunit M [Jatropha curcas]
18 Hb_015763_030 0.0864590446 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000538_100 0.0880948008 - - conserved hypothetical protein [Ricinus communis]
20 Hb_004994_040 0.0883717964 - - Glycogen synthase kinase-3 beta, putative [Ricinus communis]

Gene co-expression network

sample Hb_002273_130 Hb_002273_130 Hb_030131_040 Hb_030131_040 Hb_002273_130--Hb_030131_040 Hb_001341_120 Hb_001341_120 Hb_002273_130--Hb_001341_120 Hb_001541_090 Hb_001541_090 Hb_002273_130--Hb_001541_090 Hb_000076_270 Hb_000076_270 Hb_002273_130--Hb_000076_270 Hb_000059_150 Hb_000059_150 Hb_002273_130--Hb_000059_150 Hb_001300_070 Hb_001300_070 Hb_002273_130--Hb_001300_070 Hb_030131_040--Hb_001341_120 Hb_001085_320 Hb_001085_320 Hb_030131_040--Hb_001085_320 Hb_000913_050 Hb_000913_050 Hb_030131_040--Hb_000913_050 Hb_001488_410 Hb_001488_410 Hb_030131_040--Hb_001488_410 Hb_030131_040--Hb_001541_090 Hb_001341_120--Hb_000076_270 Hb_000480_010 Hb_000480_010 Hb_001341_120--Hb_000480_010 Hb_004837_190 Hb_004837_190 Hb_001341_120--Hb_004837_190 Hb_001341_120--Hb_000913_050 Hb_001541_090--Hb_001341_120 Hb_008103_040 Hb_008103_040 Hb_001541_090--Hb_008103_040 Hb_001541_090--Hb_001488_410 Hb_003464_020 Hb_003464_020 Hb_001541_090--Hb_003464_020 Hb_000076_270--Hb_001300_070 Hb_091384_010 Hb_091384_010 Hb_000076_270--Hb_091384_010 Hb_000076_270--Hb_000913_050 Hb_002272_180 Hb_002272_180 Hb_000076_270--Hb_002272_180 Hb_000173_510 Hb_000173_510 Hb_000059_150--Hb_000173_510 Hb_000743_040 Hb_000743_040 Hb_000059_150--Hb_000743_040 Hb_000600_070 Hb_000600_070 Hb_000059_150--Hb_000600_070 Hb_010381_060 Hb_010381_060 Hb_000059_150--Hb_010381_060 Hb_004450_010 Hb_004450_010 Hb_000059_150--Hb_004450_010 Hb_001300_070--Hb_001341_120 Hb_001300_070--Hb_000059_150 Hb_008595_010 Hb_008595_010 Hb_001300_070--Hb_008595_010 Hb_005098_010 Hb_005098_010 Hb_001300_070--Hb_005098_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.7109 13.9286 15.3002 15.4547 37.8522 36.9503
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.7865 10.9954 9.57391 16.8873 11.2192

CAGE analysis