Hb_002276_020

Information

Type transcription factor
Description TF Family: bHLH
Location Contig2276: 20014-24642
Sequence    

Annotation

kegg
ID rcu:RCOM_1466300
description hypothetical protein
nr
ID XP_012080485.1
description PREDICTED: transcription factor bHLH49 isoform X1 [Jatropha curcas]
swissprot
ID Q9CAA9
description Transcription factor bHLH49 OS=Arabidopsis thaliana GN=BHLH49 PE=1 SV=1
trembl
ID A0A067K8S8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11799 PE=4 SV=1
Gene Ontology
ID GO:0005634
description transcription factor bhlh49 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23724: 20121-24607 , PASA_asmbl_23725: 20176-20867
cDNA
(Sanger)
(ID:Location)		 001_E07.ab1: 20121-21537 , 018_O17.ab1: 20121-21440 , 037_C24.ab1: 20121-21530

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002276_020 0.0 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH49 isoform X1 [Jatropha curcas]
2 Hb_000665_130 0.0667295748 - - PREDICTED: uncharacterized protein LOC105637599 isoform X2 [Jatropha curcas]
3 Hb_011316_090 0.0750395165 - - OSJNBa0004L19.22 [Oryza sativa Japonica Group]
4 Hb_001369_750 0.0775751249 - - PREDICTED: probable rRNA-processing protein EBP2 homolog [Jatropha curcas]
5 Hb_001951_180 0.0826194562 - - PREDICTED: carboxyl-terminal-processing peptidase 1, chloroplastic isoform X2 [Jatropha curcas]
6 Hb_000261_060 0.0829005871 - - PREDICTED: pre-mRNA-splicing factor 38B-like [Jatropha curcas]
7 Hb_010883_040 0.1009924731 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 1 [Jatropha curcas]
8 Hb_015941_020 0.1085202067 - - -
9 Hb_005253_030 0.1086168976 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
10 Hb_018292_010 0.108846568 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-3 [Jatropha curcas]
11 Hb_001999_210 0.1094502236 - - PREDICTED: sodium-dependent phosphate transport protein 1, chloroplastic [Eucalyptus grandis]
12 Hb_005463_110 0.1095318075 - - PREDICTED: glyoxylate/hydroxypyruvate reductase HPR3-like [Jatropha curcas]
13 Hb_002849_100 0.1100356221 - - PREDICTED: mechanosensitive ion channel protein 1, mitochondrial [Jatropha curcas]
14 Hb_003467_030 0.1108873673 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
15 Hb_007922_020 0.1129064232 - - PREDICTED: uncharacterized protein LOC105646505 [Jatropha curcas]
16 Hb_036790_080 0.11509127 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 39 [Jatropha curcas]
17 Hb_003929_110 0.1161571391 - - PREDICTED: probable GTP diphosphokinase CRSH, chloroplastic isoform X1 [Jatropha curcas]
18 Hb_001314_080 0.1162522978 - - hypothetical protein POPTR_0018s14330g [Populus trichocarpa]
19 Hb_002496_020 0.1173244488 - - DNA binding protein, putative [Ricinus communis]
20 Hb_000335_030 0.1189153728 - - PREDICTED: pentatricopeptide repeat-containing protein At2g17033 [Jatropha curcas]

Gene co-expression network

sample Hb_002276_020 Hb_002276_020 Hb_000665_130 Hb_000665_130 Hb_002276_020--Hb_000665_130 Hb_011316_090 Hb_011316_090 Hb_002276_020--Hb_011316_090 Hb_001369_750 Hb_001369_750 Hb_002276_020--Hb_001369_750 Hb_001951_180 Hb_001951_180 Hb_002276_020--Hb_001951_180 Hb_000261_060 Hb_000261_060 Hb_002276_020--Hb_000261_060 Hb_010883_040 Hb_010883_040 Hb_002276_020--Hb_010883_040 Hb_000186_050 Hb_000186_050 Hb_000665_130--Hb_000186_050 Hb_000665_130--Hb_001369_750 Hb_000665_130--Hb_011316_090 Hb_005736_020 Hb_005736_020 Hb_000665_130--Hb_005736_020 Hb_007508_060 Hb_007508_060 Hb_000665_130--Hb_007508_060 Hb_011316_090--Hb_001951_180 Hb_011316_090--Hb_000261_060 Hb_011316_090--Hb_001369_750 Hb_000281_090 Hb_000281_090 Hb_011316_090--Hb_000281_090 Hb_000479_250 Hb_000479_250 Hb_001369_750--Hb_000479_250 Hb_001369_750--Hb_000261_060 Hb_001366_180 Hb_001366_180 Hb_001369_750--Hb_001366_180 Hb_006274_030 Hb_006274_030 Hb_001369_750--Hb_006274_030 Hb_002496_020 Hb_002496_020 Hb_001369_750--Hb_002496_020 Hb_036790_080 Hb_036790_080 Hb_001951_180--Hb_036790_080 Hb_005253_030 Hb_005253_030 Hb_001951_180--Hb_005253_030 Hb_001951_180--Hb_000261_060 Hb_153533_010 Hb_153533_010 Hb_001951_180--Hb_153533_010 Hb_007922_020 Hb_007922_020 Hb_000261_060--Hb_007922_020 Hb_000261_060--Hb_036790_080 Hb_000261_060--Hb_005253_030 Hb_001008_120 Hb_001008_120 Hb_000261_060--Hb_001008_120 Hb_007317_140 Hb_007317_140 Hb_000261_060--Hb_007317_140 Hb_001314_080 Hb_001314_080 Hb_010883_040--Hb_001314_080 Hb_015941_020 Hb_015941_020 Hb_010883_040--Hb_015941_020 Hb_010883_040--Hb_002496_020 Hb_000335_030 Hb_000335_030 Hb_010883_040--Hb_000335_030 Hb_010883_040--Hb_001369_750
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.3757 11.3654 7.05966 14.537 12.5521 17.6273
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.2397 10.2508 14.5455 11.6267 32.7941

CAGE analysis