Hb_002276_170

Information

Type transcription factor
Description TF Family: bHLH
Location Contig2276: 162699-166712
Sequence    

Annotation

kegg
ID rcu:RCOM_1466780
description hypothetical protein
nr
ID XP_002514584.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9CAA4
description Transcription factor BIM2 OS=Arabidopsis thaliana GN=BIM2 PE=1 SV=1
trembl
ID B9RLG5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1466780 PE=4 SV=1
Gene Ontology
ID GO:0046983
description transcription factor bim2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23743: 162768-166668
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002276_170 0.0 transcription factor TF Family: bHLH conserved hypothetical protein [Ricinus communis]
2 Hb_000313_260 0.0560813329 - - auxin:hydrogen symporter, putative [Ricinus communis]
3 Hb_000915_260 0.0699331485 - - PREDICTED: uncharacterized protein LOC105628514 isoform X1 [Jatropha curcas]
4 Hb_001047_220 0.0718379934 - - PREDICTED: F-box protein SKIP17-like [Jatropha curcas]
5 Hb_000317_470 0.0737521625 - - PREDICTED: CCR4-NOT transcription complex subunit 11 [Jatropha curcas]
6 Hb_001632_040 0.0756304915 - - PREDICTED: transmembrane protein adipocyte-associated 1 homolog isoform X1 [Jatropha curcas]
7 Hb_004414_060 0.0756993636 - - hypothetical protein JCGZ_17225 [Jatropha curcas]
8 Hb_032986_010 0.0784212053 - - Nicotinate-nucleotide pyrophosphorylase [carboxylating], putative [Ricinus communis]
9 Hb_017700_010 0.0796897069 - - PREDICTED: probable protein S-acyltransferase 15 [Jatropha curcas]
10 Hb_034432_030 0.0801268221 - - PREDICTED: probable glycosyltransferase At5g20260 isoform X1 [Jatropha curcas]
11 Hb_004007_220 0.0809933976 - - PREDICTED: casein kinase II subunit alpha [Jatropha curcas]
12 Hb_003163_020 0.0813415406 - - PREDICTED: polyadenylate-binding protein-interacting protein 12-like isoform X1 [Jatropha curcas]
13 Hb_001141_020 0.0813709138 - - PREDICTED: stress-induced-phosphoprotein 1 [Jatropha curcas]
14 Hb_001379_110 0.0822854391 - - PREDICTED: sec1 family domain-containing protein MIP3 [Jatropha curcas]
15 Hb_002997_080 0.0824203338 - - PREDICTED: uncharacterized protein LOC105631115 [Jatropha curcas]
16 Hb_018133_040 0.0847053015 - - PREDICTED: probable apyrase 7 [Jatropha curcas]
17 Hb_003375_070 0.0873421659 - - PREDICTED: alkylated DNA repair protein alkB homolog 8 [Jatropha curcas]
18 Hb_002272_130 0.0884912657 - - PREDICTED: DNA excision repair protein ERCC-1 [Jatropha curcas]
19 Hb_011930_160 0.0895778271 - - PREDICTED: tetratricopeptide repeat protein 38-like [Jatropha curcas]
20 Hb_028089_010 0.0905465776 - - PREDICTED: homoserine dehydrogenase [Jatropha curcas]

Gene co-expression network

sample Hb_002276_170 Hb_002276_170 Hb_000313_260 Hb_000313_260 Hb_002276_170--Hb_000313_260 Hb_000915_260 Hb_000915_260 Hb_002276_170--Hb_000915_260 Hb_001047_220 Hb_001047_220 Hb_002276_170--Hb_001047_220 Hb_000317_470 Hb_000317_470 Hb_002276_170--Hb_000317_470 Hb_001632_040 Hb_001632_040 Hb_002276_170--Hb_001632_040 Hb_004414_060 Hb_004414_060 Hb_002276_170--Hb_004414_060 Hb_000116_500 Hb_000116_500 Hb_000313_260--Hb_000116_500 Hb_017700_010 Hb_017700_010 Hb_000313_260--Hb_017700_010 Hb_034432_030 Hb_034432_030 Hb_000313_260--Hb_034432_030 Hb_000313_260--Hb_001047_220 Hb_001379_110 Hb_001379_110 Hb_000313_260--Hb_001379_110 Hb_009898_050 Hb_009898_050 Hb_000915_260--Hb_009898_050 Hb_001141_020 Hb_001141_020 Hb_000915_260--Hb_001141_020 Hb_168978_030 Hb_168978_030 Hb_000915_260--Hb_168978_030 Hb_006153_070 Hb_006153_070 Hb_000915_260--Hb_006153_070 Hb_001205_120 Hb_001205_120 Hb_000915_260--Hb_001205_120 Hb_000958_140 Hb_000958_140 Hb_001047_220--Hb_000958_140 Hb_000462_060 Hb_000462_060 Hb_001047_220--Hb_000462_060 Hb_001047_220--Hb_034432_030 Hb_001047_220--Hb_001379_110 Hb_138596_010 Hb_138596_010 Hb_001047_220--Hb_138596_010 Hb_000975_040 Hb_000975_040 Hb_001047_220--Hb_000975_040 Hb_123915_040 Hb_123915_040 Hb_000317_470--Hb_123915_040 Hb_032986_010 Hb_032986_010 Hb_000317_470--Hb_032986_010 Hb_000522_170 Hb_000522_170 Hb_000317_470--Hb_000522_170 Hb_003163_020 Hb_003163_020 Hb_000317_470--Hb_003163_020 Hb_007416_300 Hb_007416_300 Hb_000317_470--Hb_007416_300 Hb_002272_130 Hb_002272_130 Hb_000317_470--Hb_002272_130 Hb_001632_040--Hb_004414_060 Hb_114310_090 Hb_114310_090 Hb_001632_040--Hb_114310_090 Hb_001243_040 Hb_001243_040 Hb_001632_040--Hb_001243_040 Hb_004907_080 Hb_004907_080 Hb_001632_040--Hb_004907_080 Hb_000342_130 Hb_000342_130 Hb_001632_040--Hb_000342_130 Hb_002835_040 Hb_002835_040 Hb_004414_060--Hb_002835_040 Hb_003964_070 Hb_003964_070 Hb_004414_060--Hb_003964_070 Hb_004414_060--Hb_003163_020 Hb_001493_030 Hb_001493_030 Hb_004414_060--Hb_001493_030 Hb_007317_110 Hb_007317_110 Hb_004414_060--Hb_007317_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.75506 3.22963 6.87363 6.22907 10.7792 7.87504
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.9326 4.54145 7.93026 5.95791 6.55242

CAGE analysis