Hb_002276_240

Information

Type -
Description -
Location Contig2276: 237229-238704
Sequence    

Annotation

kegg
ID rcu:RCOM_1466950
description zinc finger protein, putative
nr
ID XP_012080454.1
description PREDICTED: uncharacterized protein LOC105640682 [Jatropha curcas]
swissprot
ID P0CH30
description E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1 PE=1 SV=1
trembl
ID A0A067KGK7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11776 PE=4 SV=1
Gene Ontology
ID GO:0005515
description zinc finger isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002276_240 0.0 - - PREDICTED: uncharacterized protein LOC105640682 [Jatropha curcas]
2 Hb_004129_070 0.0419357439 - - PREDICTED: conserved oligomeric Golgi complex subunit 5 [Jatropha curcas]
3 Hb_009083_070 0.0512841235 - - PREDICTED: uncharacterized protein LOC105639870 [Jatropha curcas]
4 Hb_002267_140 0.0557169968 - - PREDICTED: VHS domain-containing protein At3g16270 [Jatropha curcas]
5 Hb_001147_110 0.0571270997 - - PREDICTED: dynamin-2A-like [Jatropha curcas]
6 Hb_001767_140 0.0573741659 - - PREDICTED: protein-tyrosine-phosphatase MKP1 [Jatropha curcas]
7 Hb_008253_030 0.0596119788 - - PREDICTED: probable carboxylesterase 11 [Jatropha curcas]
8 Hb_000174_060 0.0622156671 - - zinc finger family protein [Populus trichocarpa]
9 Hb_003866_080 0.0629205206 - - PREDICTED: uncharacterized protein LOC105639150 [Jatropha curcas]
10 Hb_008253_020 0.0638376638 - - PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform-like [Jatropha curcas]
11 Hb_000162_030 0.0648750827 desease resistance Gene Name: RLI ABC transporter family protein [Hevea brasiliensis]
12 Hb_006615_120 0.0658659202 - - PREDICTED: uncharacterized protein LOC105640682 [Jatropha curcas]
13 Hb_184798_080 0.0661992962 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER-related [Jatropha curcas]
14 Hb_000479_220 0.0702574545 - - PREDICTED: uncharacterized protein LOC105644125 [Jatropha curcas]
15 Hb_009615_170 0.0712729948 - - PREDICTED: sphingoid long-chain bases kinase 1 isoform X1 [Jatropha curcas]
16 Hb_000162_280 0.0712900599 - - PREDICTED: CTL-like protein DDB_G0288717 [Populus euphratica]
17 Hb_140049_040 0.0720907601 - - PREDICTED: uncharacterized protein LOC105632012 [Jatropha curcas]
18 Hb_007810_110 0.0726150687 - - PREDICTED: DNA/RNA-binding protein KIN17 [Jatropha curcas]
19 Hb_000070_080 0.074356961 - - PREDICTED: uncharacterized protein LOC105645742 isoform X2 [Jatropha curcas]
20 Hb_001135_120 0.0744153908 - - PREDICTED: TBC1 domain family member 10B-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002276_240 Hb_002276_240 Hb_004129_070 Hb_004129_070 Hb_002276_240--Hb_004129_070 Hb_009083_070 Hb_009083_070 Hb_002276_240--Hb_009083_070 Hb_002267_140 Hb_002267_140 Hb_002276_240--Hb_002267_140 Hb_001147_110 Hb_001147_110 Hb_002276_240--Hb_001147_110 Hb_001767_140 Hb_001767_140 Hb_002276_240--Hb_001767_140 Hb_008253_030 Hb_008253_030 Hb_002276_240--Hb_008253_030 Hb_000174_060 Hb_000174_060 Hb_004129_070--Hb_000174_060 Hb_008253_020 Hb_008253_020 Hb_004129_070--Hb_008253_020 Hb_006615_120 Hb_006615_120 Hb_004129_070--Hb_006615_120 Hb_001033_050 Hb_001033_050 Hb_004129_070--Hb_001033_050 Hb_001135_120 Hb_001135_120 Hb_004129_070--Hb_001135_120 Hb_184798_080 Hb_184798_080 Hb_009083_070--Hb_184798_080 Hb_009083_070--Hb_004129_070 Hb_009083_070--Hb_001135_120 Hb_002046_110 Hb_002046_110 Hb_009083_070--Hb_002046_110 Hb_005918_010 Hb_005918_010 Hb_009083_070--Hb_005918_010 Hb_002267_140--Hb_008253_030 Hb_002267_140--Hb_001767_140 Hb_138596_010 Hb_138596_010 Hb_002267_140--Hb_138596_010 Hb_002253_080 Hb_002253_080 Hb_002267_140--Hb_002253_080 Hb_002843_120 Hb_002843_120 Hb_002267_140--Hb_002843_120 Hb_000162_030 Hb_000162_030 Hb_001147_110--Hb_000162_030 Hb_001147_110--Hb_008253_030 Hb_001147_110--Hb_001767_140 Hb_001147_110--Hb_184798_080 Hb_002325_040 Hb_002325_040 Hb_001147_110--Hb_002325_040 Hb_001767_140--Hb_008253_030 Hb_001767_140--Hb_002253_080 Hb_140049_040 Hb_140049_040 Hb_001767_140--Hb_140049_040 Hb_001767_140--Hb_000174_060 Hb_003866_080 Hb_003866_080 Hb_001767_140--Hb_003866_080 Hb_008253_030--Hb_002253_080 Hb_000479_220 Hb_000479_220 Hb_008253_030--Hb_000479_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.4975 18.0011 11.4031 12.9776 12.4997 12.7175
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.61753 7.40874 10.4801 11.3921 9.47127

CAGE analysis