Hb_002281_020

Information

Type -
Description -
Location Contig2281: 13080-21567
Sequence    

Annotation

kegg
ID rcu:RCOM_0302290
description Actin, macronuclear, putative
nr
ID XP_012074147.1
description PREDICTED: actin-related protein 8 [Jatropha curcas]
swissprot
ID Q9FKT0
description Actin-related protein 8 OS=Arabidopsis thaliana GN=ARP8 PE=2 SV=1
trembl
ID A0A067KJN2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09532 PE=3 SV=1
Gene Ontology
ID GO:0005515
description actin-related protein 8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23772: 13046-21555 , PASA_asmbl_23773: 13046-15896 , PASA_asmbl_23774: 16388-16717 , PASA_asmbl_23776: 16908-17364
cDNA
(Sanger)
(ID:Location)		 048_J03.ab1: 20672-21552

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002281_020 0.0 - - PREDICTED: actin-related protein 8 [Jatropha curcas]
2 Hb_003440_020 0.0840544291 - - PREDICTED: serine protease SPPA, chloroplastic isoform X2 [Jatropha curcas]
3 Hb_008375_010 0.0923857149 - - PREDICTED: carbon catabolite repressor protein 4 homolog 4 isoform X3 [Pyrus x bretschneideri]
4 Hb_002486_080 0.0925976923 - - PREDICTED: cytosolic endo-beta-N-acetylglucosaminidase isoform X1 [Jatropha curcas]
5 Hb_007416_110 0.0949650044 - - PREDICTED: probable cyclic nucleotide-gated ion channel 14 isoform X1 [Jatropha curcas]
6 Hb_000585_110 0.1001296057 - - PREDICTED: probable protein phosphatase 2C 66 [Jatropha curcas]
7 Hb_001301_280 0.1014807273 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001951_060 0.1019786508 - - PREDICTED: UDP-N-acetylglucosamine transferase subunit ALG14 [Jatropha curcas]
9 Hb_005218_080 0.1022677037 - - PREDICTED: branched-chain-amino-acid aminotransferase 3, chloroplastic isoform X1 [Jatropha curcas]
10 Hb_001105_100 0.1038955822 - - PREDICTED: cathepsin B [Jatropha curcas]
11 Hb_055690_010 0.1052176043 - - PREDICTED: pheophytinase, chloroplastic [Jatropha curcas]
12 Hb_004957_030 0.105379324 - - hydroxyproline-rich glycoprotein [Populus trichocarpa]
13 Hb_000358_020 0.1059122835 - - PREDICTED: uncharacterized protein C05D11.7-like [Jatropha curcas]
14 Hb_001571_060 0.1097642229 - - PREDICTED: uncharacterized protein LOC105643976 [Jatropha curcas]
15 Hb_106890_010 0.1118746875 - - PREDICTED: probable starch synthase 4, chloroplastic/amyloplastic isoform X2 [Jatropha curcas]
16 Hb_030736_040 0.112508766 - - PREDICTED: uncharacterized protein LOC105638926 isoform X1 [Jatropha curcas]
17 Hb_000035_350 0.1130380553 - - PREDICTED: monogalactosyldiacylglycerol synthase, chloroplastic [Jatropha curcas]
18 Hb_000909_080 0.1131695874 - - PREDICTED: inosine-5'-monophosphate dehydrogenase 2-like [Jatropha curcas]
19 Hb_007416_070 0.1163419383 transcription factor TF Family: B3 hypothetical protein JCGZ_07038 [Jatropha curcas]
20 Hb_000510_170 0.1171058591 - - Glycosyltransferase QUASIMODO1, putative [Ricinus communis]

Gene co-expression network

sample Hb_002281_020 Hb_002281_020 Hb_003440_020 Hb_003440_020 Hb_002281_020--Hb_003440_020 Hb_008375_010 Hb_008375_010 Hb_002281_020--Hb_008375_010 Hb_002486_080 Hb_002486_080 Hb_002281_020--Hb_002486_080 Hb_007416_110 Hb_007416_110 Hb_002281_020--Hb_007416_110 Hb_000585_110 Hb_000585_110 Hb_002281_020--Hb_000585_110 Hb_001301_280 Hb_001301_280 Hb_002281_020--Hb_001301_280 Hb_000358_020 Hb_000358_020 Hb_003440_020--Hb_000358_020 Hb_000909_080 Hb_000909_080 Hb_003440_020--Hb_000909_080 Hb_005218_080 Hb_005218_080 Hb_003440_020--Hb_005218_080 Hb_055690_010 Hb_055690_010 Hb_003440_020--Hb_055690_010 Hb_000890_080 Hb_000890_080 Hb_003440_020--Hb_000890_080 Hb_106890_010 Hb_106890_010 Hb_003440_020--Hb_106890_010 Hb_007441_310 Hb_007441_310 Hb_008375_010--Hb_007441_310 Hb_008375_010--Hb_055690_010 Hb_008375_010--Hb_000585_110 Hb_008147_080 Hb_008147_080 Hb_008375_010--Hb_008147_080 Hb_002075_030 Hb_002075_030 Hb_008375_010--Hb_002075_030 Hb_000008_350 Hb_000008_350 Hb_008375_010--Hb_000008_350 Hb_002486_080--Hb_001301_280 Hb_001951_060 Hb_001951_060 Hb_002486_080--Hb_001951_060 Hb_007416_070 Hb_007416_070 Hb_002486_080--Hb_007416_070 Hb_000465_150 Hb_000465_150 Hb_002486_080--Hb_000465_150 Hb_001571_060 Hb_001571_060 Hb_002486_080--Hb_001571_060 Hb_007416_110--Hb_000465_150 Hb_000510_170 Hb_000510_170 Hb_007416_110--Hb_000510_170 Hb_007416_110--Hb_003440_020 Hb_007416_110--Hb_002486_080 Hb_000638_130 Hb_000638_130 Hb_007416_110--Hb_000638_130 Hb_000585_110--Hb_055690_010 Hb_002249_080 Hb_002249_080 Hb_000585_110--Hb_002249_080 Hb_000007_090 Hb_000007_090 Hb_000585_110--Hb_000007_090 Hb_000585_110--Hb_007441_310 Hb_019654_020 Hb_019654_020 Hb_000585_110--Hb_019654_020 Hb_000417_390 Hb_000417_390 Hb_000585_110--Hb_000417_390 Hb_001301_280--Hb_001951_060 Hb_000365_010 Hb_000365_010 Hb_001301_280--Hb_000365_010 Hb_011671_120 Hb_011671_120 Hb_001301_280--Hb_011671_120 Hb_001301_280--Hb_007416_070 Hb_001619_060 Hb_001619_060 Hb_001301_280--Hb_001619_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.58103 7.46501 16.0236 16.3317 1.42197 5.95663
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.23759 6.26969 6.71124 16.0055 21.3004

CAGE analysis