Hb_002282_020

Information

Type -
Description -
Location Contig2282: 42644-47972
Sequence    

Annotation

kegg
ID rcu:RCOM_0813320
description hypothetical protein
nr
ID XP_012066869.1
description PREDICTED: uncharacterized protein LOC105629828 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L4Z6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01597 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23777: 42714-43041
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002282_020 0.0 - - PREDICTED: uncharacterized protein LOC105629828 [Jatropha curcas]
2 Hb_002527_070 0.0830462999 - - axonemal dynein light chain, putative [Ricinus communis]
3 Hb_012522_030 0.0854244359 - - ankyrin repeat-containing protein, putative [Ricinus communis]
4 Hb_000861_040 0.089680752 - - PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein 1 [Jatropha curcas]
5 Hb_002326_030 0.0898175799 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein REM16-like isoform X1 [Jatropha curcas]
6 Hb_002539_080 0.0899168509 - - PREDICTED: triose phosphate/phosphate translocator, chloroplastic-like [Jatropha curcas]
7 Hb_024650_020 0.0924594214 - - PREDICTED: uncharacterized protein LOC105646626 [Jatropha curcas]
8 Hb_026988_020 0.0927606831 - - outward rectifying K+ channel [Hevea brasiliensis]
9 Hb_001711_030 0.0930008843 - - PREDICTED: uncharacterized protein LOC105642409 [Jatropha curcas]
10 Hb_000085_250 0.0944547068 - - sodium/hydrogen exchanger, putative [Ricinus communis]
11 Hb_183963_020 0.0948871902 - - PREDICTED: uncharacterized protein LOC105644615 [Jatropha curcas]
12 Hb_000922_270 0.0949510692 - - iron-sulfur cluster scaffold protein [Hevea brasiliensis]
13 Hb_001427_120 0.0950565974 - - PREDICTED: uncharacterized protein LOC105637787 [Jatropha curcas]
14 Hb_000051_040 0.0953840217 - - PREDICTED: uncharacterized protein LOC102597788 [Solanum tuberosum]
15 Hb_002291_030 0.0957023995 - - PREDICTED: vesicle transport protein SFT2B [Jatropha curcas]
16 Hb_002387_060 0.1010129797 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001366_230 0.1031354806 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000089_160 0.1045564714 - - 60S ribosomal protein L5B [Hevea brasiliensis]
19 Hb_000427_110 0.1049066021 - - PREDICTED: DNA repair protein XRCC2 homolog isoform X2 [Jatropha curcas]
20 Hb_002352_010 0.1053575811 - - PREDICTED: rop guanine nucleotide exchange factor 1 [Jatropha curcas]

Gene co-expression network

sample Hb_002282_020 Hb_002282_020 Hb_002527_070 Hb_002527_070 Hb_002282_020--Hb_002527_070 Hb_012522_030 Hb_012522_030 Hb_002282_020--Hb_012522_030 Hb_000861_040 Hb_000861_040 Hb_002282_020--Hb_000861_040 Hb_002326_030 Hb_002326_030 Hb_002282_020--Hb_002326_030 Hb_002539_080 Hb_002539_080 Hb_002282_020--Hb_002539_080 Hb_024650_020 Hb_024650_020 Hb_002282_020--Hb_024650_020 Hb_001427_120 Hb_001427_120 Hb_002527_070--Hb_001427_120 Hb_002527_070--Hb_000861_040 Hb_001711_030 Hb_001711_030 Hb_002527_070--Hb_001711_030 Hb_003408_030 Hb_003408_030 Hb_002527_070--Hb_003408_030 Hb_000983_100 Hb_000983_100 Hb_002527_070--Hb_000983_100 Hb_002352_010 Hb_002352_010 Hb_002527_070--Hb_002352_010 Hb_002387_060 Hb_002387_060 Hb_012522_030--Hb_002387_060 Hb_012522_030--Hb_002326_030 Hb_002291_030 Hb_002291_030 Hb_012522_030--Hb_002291_030 Hb_012522_030--Hb_001711_030 Hb_000419_040 Hb_000419_040 Hb_012522_030--Hb_000419_040 Hb_000861_040--Hb_003408_030 Hb_000861_040--Hb_002326_030 Hb_007229_060 Hb_007229_060 Hb_000861_040--Hb_007229_060 Hb_026988_020 Hb_026988_020 Hb_000861_040--Hb_026988_020 Hb_000861_040--Hb_000983_100 Hb_005455_070 Hb_005455_070 Hb_002326_030--Hb_005455_070 Hb_000173_170 Hb_000173_170 Hb_002326_030--Hb_000173_170 Hb_001473_130 Hb_001473_130 Hb_002326_030--Hb_001473_130 Hb_002326_030--Hb_007229_060 Hb_002539_080--Hb_001711_030 Hb_002539_080--Hb_002527_070 Hb_002735_060 Hb_002735_060 Hb_002539_080--Hb_002735_060 Hb_001863_480 Hb_001863_480 Hb_002539_080--Hb_001863_480 Hb_001439_170 Hb_001439_170 Hb_002539_080--Hb_001439_170 Hb_065500_050 Hb_065500_050 Hb_024650_020--Hb_065500_050 Hb_023386_080 Hb_023386_080 Hb_024650_020--Hb_023386_080 Hb_002447_030 Hb_002447_030 Hb_024650_020--Hb_002447_030 Hb_024650_020--Hb_001427_120 Hb_044662_070 Hb_044662_070 Hb_024650_020--Hb_044662_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.28641 0.17717 0.582183 0.731484 2.37761 2.46125
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.28904 4.24449 4.59362 1.05962 0.173016

CAGE analysis