Hb_002282_040

Information

Type -
Description -
Location Contig2282: 106398-108111
Sequence    

Annotation

kegg
ID csv:101218085
description uncharacterized LOC101218085
nr
ID CAN60490.1
description hypothetical protein VITISV_030841 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID A5AQM5
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_030841 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002282_040 0.0 - - hypothetical protein VITISV_030841 [Vitis vinifera]
2 Hb_096224_020 0.2083127782 - - hypothetical protein JCGZ_06980 [Jatropha curcas]
3 Hb_000693_020 0.2084990997 - - PREDICTED: VQ motif-containing protein 11 [Jatropha curcas]
4 Hb_003209_050 0.2703378139 - - hypothetical protein JCGZ_15683 [Jatropha curcas]
5 Hb_003020_080 0.2885586258 - - -
6 Hb_128051_010 0.2934734183 - - -
7 Hb_003322_010 0.2935012424 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
8 Hb_000317_530 0.3079491366 - - hypothetical protein, partial [Pseudomonas fluorescens]
9 Hb_109268_010 0.3135369549 - - PREDICTED: uncharacterized protein LOC105650977 [Jatropha curcas]
10 Hb_000613_150 0.3140469101 - - PREDICTED: uncharacterized protein LOC105641537 isoform X1 [Jatropha curcas]
11 Hb_004116_130 0.3178463081 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
12 Hb_000890_090 0.3219010752 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF086 [Jatropha curcas]
13 Hb_000062_410 0.3289222442 - - PREDICTED: uncharacterized protein LOC105644766 [Jatropha curcas]
14 Hb_001022_060 0.331432521 - - PREDICTED: alpha/beta hydrolase domain-containing protein 11 [Jatropha curcas]
15 Hb_000454_060 0.3344902558 - - Uncharacterized protein TCM_006778 [Theobroma cacao]
16 Hb_001529_070 0.3359253721 transcription factor TF Family: AP2 hypothetical protein POPTR_0018s09900g [Populus trichocarpa]
17 Hb_000402_110 0.336298367 - - hypothetical protein JCGZ_17786 [Jatropha curcas]
18 Hb_088274_010 0.3382046253 - - PREDICTED: transcription factor BEE 1-like [Jatropha curcas]
19 Hb_012368_070 0.3382098941 - - RNA binding protein, putative [Ricinus communis]
20 Hb_001632_030 0.3383927467 - - PREDICTED: chaperone protein ClpB1 [Jatropha curcas]

Gene co-expression network

sample Hb_002282_040 Hb_002282_040 Hb_096224_020 Hb_096224_020 Hb_002282_040--Hb_096224_020 Hb_000693_020 Hb_000693_020 Hb_002282_040--Hb_000693_020 Hb_003209_050 Hb_003209_050 Hb_002282_040--Hb_003209_050 Hb_003020_080 Hb_003020_080 Hb_002282_040--Hb_003020_080 Hb_128051_010 Hb_128051_010 Hb_002282_040--Hb_128051_010 Hb_003322_010 Hb_003322_010 Hb_002282_040--Hb_003322_010 Hb_109268_010 Hb_109268_010 Hb_096224_020--Hb_109268_010 Hb_096224_020--Hb_128051_010 Hb_004525_060 Hb_004525_060 Hb_096224_020--Hb_004525_060 Hb_005779_050 Hb_005779_050 Hb_096224_020--Hb_005779_050 Hb_096224_020--Hb_003020_080 Hb_006816_400 Hb_006816_400 Hb_000693_020--Hb_006816_400 Hb_004116_130 Hb_004116_130 Hb_000693_020--Hb_004116_130 Hb_000454_060 Hb_000454_060 Hb_000693_020--Hb_000454_060 Hb_000693_020--Hb_128051_010 Hb_013399_010 Hb_013399_010 Hb_000693_020--Hb_013399_010 Hb_003209_050--Hb_128051_010 Hb_003209_050--Hb_109268_010 Hb_003209_050--Hb_096224_020 Hb_003209_050--Hb_000693_020 Hb_001022_060 Hb_001022_060 Hb_003209_050--Hb_001022_060 Hb_003020_080--Hb_003322_010 Hb_004931_010 Hb_004931_010 Hb_003020_080--Hb_004931_010 Hb_004931_080 Hb_004931_080 Hb_003020_080--Hb_004931_080 Hb_011457_020 Hb_011457_020 Hb_003020_080--Hb_011457_020 Hb_128051_010--Hb_109268_010 Hb_128051_010--Hb_001022_060 Hb_000077_240 Hb_000077_240 Hb_128051_010--Hb_000077_240 Hb_139138_010 Hb_139138_010 Hb_128051_010--Hb_139138_010 Hb_003398_030 Hb_003398_030 Hb_128051_010--Hb_003398_030 Hb_003322_010--Hb_004931_010 Hb_001221_560 Hb_001221_560 Hb_003322_010--Hb_001221_560 Hb_000098_290 Hb_000098_290 Hb_003322_010--Hb_000098_290 Hb_000803_040 Hb_000803_040 Hb_003322_010--Hb_000803_040 Hb_001377_400 Hb_001377_400 Hb_003322_010--Hb_001377_400
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0260262 0.0610477 0.00956023 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.089366 0.0468721 0 0.0373984 0

CAGE analysis