Hb_002284_010

Information

Type -
Description -
Location Contig2284: 29269-30392
Sequence    

Annotation

kegg
ID rcu:RCOM_1602000
description hypothetical protein
nr
ID XP_002510722.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9SYQ0
description Increased DNA methylation 3 OS=Arabidopsis thaliana GN=IDM3 PE=1 SV=1
trembl
ID B9R8S9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1602000 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23789: 29268-30122
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002284_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_005941_040 0.0577878531 - - PREDICTED: CASP-like protein 5A2 [Jatropha curcas]
3 Hb_029866_060 0.0687955579 - - hypothetical protein PRUPE_ppa012628mg [Prunus persica]
4 Hb_002163_020 0.0735953602 transcription factor TF Family: PHD PREDICTED: BAH and coiled-coil domain-containing protein 1-like [Jatropha curcas]
5 Hb_000635_180 0.0744624878 - - PREDICTED: CTD small phosphatase-like protein 2 isoform X1 [Jatropha curcas]
6 Hb_002301_140 0.0778929835 - - PREDICTED: uncharacterized protein At4g28440 [Jatropha curcas]
7 Hb_028995_040 0.0826155142 - - PREDICTED: protein MODIFIER OF SNC1 11 isoform X1 [Jatropha curcas]
8 Hb_001235_190 0.0842767685 - - PREDICTED: peroxisome biogenesis protein 19-2-like [Jatropha curcas]
9 Hb_008173_090 0.0863887907 - - glutathione peroxidase, putative [Ricinus communis]
10 Hb_003207_190 0.0864870411 - - PREDICTED: UDP-galactose/UDP-glucose transporter 2 [Populus euphratica]
11 Hb_000009_160 0.0868798399 - - RUB1 conjugating enzyme 1 isoform 2 [Theobroma cacao]
12 Hb_000915_090 0.0889233589 - - PREDICTED: transcription initiation factor TFIID subunit 14b [Jatropha curcas]
13 Hb_055062_030 0.0905871341 - - PREDICTED: mediator of RNA polymerase II transcription subunit 10b-like isoform X1 [Jatropha curcas]
14 Hb_002963_010 0.0910849605 - - PREDICTED: autophagy-related protein 18b-like isoform X1 [Jatropha curcas]
15 Hb_029866_090 0.0920010806 - - PREDICTED: uncharacterized protein LOC105648377 [Jatropha curcas]
16 Hb_001722_100 0.0927591891 - - conserved hypothetical protein [Ricinus communis]
17 Hb_005539_350 0.092965951 - - conserved hypothetical protein [Ricinus communis]
18 Hb_004635_100 0.0930286287 - - PREDICTED: L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase isoform X1 [Jatropha curcas]
19 Hb_000510_130 0.0933794793 - - PREDICTED: PRA1 family protein F2-like [Jatropha curcas]
20 Hb_159809_020 0.093629063 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_002284_010 Hb_002284_010 Hb_005941_040 Hb_005941_040 Hb_002284_010--Hb_005941_040 Hb_029866_060 Hb_029866_060 Hb_002284_010--Hb_029866_060 Hb_002163_020 Hb_002163_020 Hb_002284_010--Hb_002163_020 Hb_000635_180 Hb_000635_180 Hb_002284_010--Hb_000635_180 Hb_002301_140 Hb_002301_140 Hb_002284_010--Hb_002301_140 Hb_028995_040 Hb_028995_040 Hb_002284_010--Hb_028995_040 Hb_005941_040--Hb_002163_020 Hb_005941_040--Hb_000635_180 Hb_000445_180 Hb_000445_180 Hb_005941_040--Hb_000445_180 Hb_005941_040--Hb_028995_040 Hb_000705_210 Hb_000705_210 Hb_005941_040--Hb_000705_210 Hb_003656_070 Hb_003656_070 Hb_029866_060--Hb_003656_070 Hb_008173_090 Hb_008173_090 Hb_029866_060--Hb_008173_090 Hb_000111_330 Hb_000111_330 Hb_029866_060--Hb_000111_330 Hb_029866_060--Hb_002163_020 Hb_129204_030 Hb_129204_030 Hb_029866_060--Hb_129204_030 Hb_011224_110 Hb_011224_110 Hb_002163_020--Hb_011224_110 Hb_000915_090 Hb_000915_090 Hb_002163_020--Hb_000915_090 Hb_000240_090 Hb_000240_090 Hb_002163_020--Hb_000240_090 Hb_000635_180--Hb_002301_140 Hb_000635_180--Hb_028995_040 Hb_030736_080 Hb_030736_080 Hb_000635_180--Hb_030736_080 Hb_001235_190 Hb_001235_190 Hb_000635_180--Hb_001235_190 Hb_002301_140--Hb_028995_040 Hb_000200_100 Hb_000200_100 Hb_002301_140--Hb_000200_100 Hb_023226_040 Hb_023226_040 Hb_002301_140--Hb_023226_040 Hb_002007_060 Hb_002007_060 Hb_002301_140--Hb_002007_060 Hb_009773_020 Hb_009773_020 Hb_002301_140--Hb_009773_020 Hb_002301_140--Hb_001235_190 Hb_001552_020 Hb_001552_020 Hb_028995_040--Hb_001552_020 Hb_000866_270 Hb_000866_270 Hb_028995_040--Hb_000866_270 Hb_004491_010 Hb_004491_010 Hb_028995_040--Hb_004491_010 Hb_004657_050 Hb_004657_050 Hb_028995_040--Hb_004657_050 Hb_003078_040 Hb_003078_040 Hb_028995_040--Hb_003078_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
29.3549 29.5578 18.9246 17.1092 29.6673 35.0328
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
57.908 62.8532 51.924 16.7816 9.67386

CAGE analysis