Hb_002284_080

Information

Type -
Description -
Location Contig2284: 69777-70361
Sequence    

Annotation

kegg
ID rcu:RCOM_1601910
description protein with unknown function
nr
ID XP_002510714.1
description protein with unknown function [Ricinus communis]
swissprot
ID Q9LM69
description RING-H2 finger protein ATL80 OS=Arabidopsis thaliana GN=ATL80 PE=2 SV=1
trembl
ID B9R8S1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1601910 PE=4 SV=1
Gene Ontology
ID GO:0008270
description ring-h2 finger protein atl80

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23799: 69129-70108 , PASA_asmbl_23801: 70112-70406
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002284_080 0.0 - - protein with unknown function [Ricinus communis]
2 Hb_002000_090 0.1226582072 - - 60S ribosomal protein L3B [Hevea brasiliensis]
3 Hb_001433_160 0.1287054159 - - phosphatase 2C family protein [Populus trichocarpa]
4 Hb_005054_020 0.1437538504 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g11320 [Jatropha curcas]
5 Hb_003710_020 0.1504884517 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53440 isoform X1 [Jatropha curcas]
6 Hb_183086_070 0.1535101247 - - PREDICTED: mitochondrial chaperone BCS1-like [Jatropha curcas]
7 Hb_001353_020 0.1559367848 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001381_060 0.159688602 - - monoxygenase, putative [Ricinus communis]
9 Hb_003670_030 0.1597899472 - - PREDICTED: probable calcium-binding protein CML35 [Jatropha curcas]
10 Hb_014720_050 0.15979618 - - PREDICTED: serine/threonine-protein kinase ATM-like [Jatropha curcas]
11 Hb_012423_060 0.1614881991 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g12460 [Jatropha curcas]
12 Hb_000913_080 0.1646661444 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 11 [Jatropha curcas]
13 Hb_000735_140 0.1663951937 - - 3-glucanase family protein [Populus trichocarpa]
14 Hb_001486_200 0.1696393381 - - PREDICTED: uncharacterized protein LOC105632606 [Jatropha curcas]
15 Hb_005064_070 0.1705473296 - - PREDICTED: uncharacterized protein LOC105648318 [Jatropha curcas]
16 Hb_000928_120 0.1729525497 - - PREDICTED: benzyl alcohol O-benzoyltransferase-like [Jatropha curcas]
17 Hb_000735_080 0.175164827 - - PREDICTED: probable xyloglucan glycosyltransferase 6 [Jatropha curcas]
18 Hb_029977_020 0.1765544816 - - PREDICTED: uncharacterized protein LOC105640153 isoform X1 [Jatropha curcas]
19 Hb_001493_140 0.1785942775 - - hypothetical protein PHAVU_010G123100g [Phaseolus vulgaris]
20 Hb_132840_160 0.1790183688 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002284_080 Hb_002284_080 Hb_002000_090 Hb_002000_090 Hb_002284_080--Hb_002000_090 Hb_001433_160 Hb_001433_160 Hb_002284_080--Hb_001433_160 Hb_005054_020 Hb_005054_020 Hb_002284_080--Hb_005054_020 Hb_003710_020 Hb_003710_020 Hb_002284_080--Hb_003710_020 Hb_183086_070 Hb_183086_070 Hb_002284_080--Hb_183086_070 Hb_001353_020 Hb_001353_020 Hb_002284_080--Hb_001353_020 Hb_002000_090--Hb_001353_020 Hb_012760_090 Hb_012760_090 Hb_002000_090--Hb_012760_090 Hb_002119_040 Hb_002119_040 Hb_002000_090--Hb_002119_040 Hb_034507_090 Hb_034507_090 Hb_002000_090--Hb_034507_090 Hb_000735_140 Hb_000735_140 Hb_002000_090--Hb_000735_140 Hb_000009_150 Hb_000009_150 Hb_001433_160--Hb_000009_150 Hb_000002_360 Hb_000002_360 Hb_001433_160--Hb_000002_360 Hb_000009_300 Hb_000009_300 Hb_001433_160--Hb_000009_300 Hb_000024_130 Hb_000024_130 Hb_001433_160--Hb_000024_130 Hb_003670_030 Hb_003670_030 Hb_001433_160--Hb_003670_030 Hb_000028_430 Hb_000028_430 Hb_005054_020--Hb_000028_430 Hb_000928_120 Hb_000928_120 Hb_005054_020--Hb_000928_120 Hb_002325_060 Hb_002325_060 Hb_005054_020--Hb_002325_060 Hb_003849_190 Hb_003849_190 Hb_005054_020--Hb_003849_190 Hb_000365_280 Hb_000365_280 Hb_005054_020--Hb_000365_280 Hb_000056_080 Hb_000056_080 Hb_005054_020--Hb_000056_080 Hb_143766_080 Hb_143766_080 Hb_003710_020--Hb_143766_080 Hb_080477_080 Hb_080477_080 Hb_003710_020--Hb_080477_080 Hb_000062_530 Hb_000062_530 Hb_003710_020--Hb_000062_530 Hb_034507_060 Hb_034507_060 Hb_003710_020--Hb_034507_060 Hb_001545_130 Hb_001545_130 Hb_003710_020--Hb_001545_130 Hb_004522_030 Hb_004522_030 Hb_003710_020--Hb_004522_030 Hb_127416_010 Hb_127416_010 Hb_183086_070--Hb_127416_010 Hb_000028_490 Hb_000028_490 Hb_183086_070--Hb_000028_490 Hb_183086_070--Hb_003710_020 Hb_007044_220 Hb_007044_220 Hb_183086_070--Hb_007044_220 Hb_183086_070--Hb_080477_080 Hb_000096_110 Hb_000096_110 Hb_001353_020--Hb_000096_110 Hb_003929_230 Hb_003929_230 Hb_001353_020--Hb_003929_230 Hb_007894_070 Hb_007894_070 Hb_001353_020--Hb_007894_070 Hb_008066_080 Hb_008066_080 Hb_001353_020--Hb_008066_080 Hb_006414_010 Hb_006414_010 Hb_001353_020--Hb_006414_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.668305 7.6057 7.48076 12.7522 0 0.10908
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.52438 1.40112 3.01556 4.57006 3.81214

CAGE analysis