Hb_002284_090

Information

Type -
Description -
Location Contig2284: 74191-77245
Sequence    

Annotation

kegg
ID rcu:RCOM_1601900
description hypothetical protein
nr
ID XP_012073602.1
description PREDICTED: outer envelope pore protein 21B, chloroplastic [Jatropha curcas]
swissprot
ID Q9SM57
description Outer envelope pore protein 21, chloroplastic OS=Pisum sativum GN=OEP21 PE=1 SV=1
trembl
ID A0A067KY64
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08050 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23803: 74243-77317
cDNA
(Sanger)
(ID:Location)		 035_F04.ab1: 74271-77242 , 047_K11.ab1: 74294-77241

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002284_090 0.0 - - PREDICTED: outer envelope pore protein 21B, chloroplastic [Jatropha curcas]
2 Hb_003398_130 0.0852180623 - - PREDICTED: serine/arginine-rich SC35-like splicing factor SCL30 [Gossypium raimondii]
3 Hb_001278_110 0.085671963 - - PREDICTED: uncharacterized protein LOC104613296 isoform X3 [Nelumbo nucifera]
4 Hb_005306_170 0.0873570194 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 4-like [Jatropha curcas]
5 Hb_000392_440 0.0899145664 - - PREDICTED: nuclear ribonuclease Z isoform X1 [Jatropha curcas]
6 Hb_000486_010 0.090283893 - - PREDICTED: uncharacterized protein LOC105646661 isoform X1 [Jatropha curcas]
7 Hb_000887_020 0.0931245943 - - PREDICTED: uncharacterized protein LOC105633527 [Jatropha curcas]
8 Hb_000046_280 0.0948269318 - - PREDICTED: uncharacterized protein LOC105631831 isoform X1 [Jatropha curcas]
9 Hb_000300_610 0.096095093 - - cytosolic copper/zinc superoxide dismutase [Hevea brasiliensis]
10 Hb_012725_050 0.0966248548 transcription factor TF Family: SET set domain protein, putative [Ricinus communis]
11 Hb_000109_090 0.0981845098 - - PREDICTED: deoxyhypusine hydroxylase [Jatropha curcas]
12 Hb_028227_020 0.0985481767 - - PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB isoform X1 [Jatropha curcas]
13 Hb_024682_010 0.1001180384 - - sterol isomerase, putative [Ricinus communis]
14 Hb_000789_090 0.1010661346 - - hypothetical protein 17 [Hevea brasiliensis]
15 Hb_118707_030 0.1011795318 - - PREDICTED: mediator of RNA polymerase II transcription subunit 19a-like isoform X1 [Beta vulgaris subsp. vulgaris]
16 Hb_000454_050 0.1030777309 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 [Vitis vinifera]
17 Hb_001124_120 0.1035631809 - - PREDICTED: uncharacterized protein LOC105631831 isoform X1 [Jatropha curcas]
18 Hb_006816_220 0.1047392776 - - PREDICTED: zinc finger matrin-type protein 2 [Jatropha curcas]
19 Hb_002685_190 0.1053738935 transcription factor TF Family: SET PREDICTED: probable zinc metalloprotease EGY1, chloroplastic [Jatropha curcas]
20 Hb_000120_760 0.10812891 transcription factor TF Family: HMG PREDICTED: HMG1/2-like protein [Populus euphratica]

Gene co-expression network

sample Hb_002284_090 Hb_002284_090 Hb_003398_130 Hb_003398_130 Hb_002284_090--Hb_003398_130 Hb_001278_110 Hb_001278_110 Hb_002284_090--Hb_001278_110 Hb_005306_170 Hb_005306_170 Hb_002284_090--Hb_005306_170 Hb_000392_440 Hb_000392_440 Hb_002284_090--Hb_000392_440 Hb_000486_010 Hb_000486_010 Hb_002284_090--Hb_000486_010 Hb_000887_020 Hb_000887_020 Hb_002284_090--Hb_000887_020 Hb_000109_090 Hb_000109_090 Hb_003398_130--Hb_000109_090 Hb_006816_220 Hb_006816_220 Hb_003398_130--Hb_006816_220 Hb_010921_010 Hb_010921_010 Hb_003398_130--Hb_010921_010 Hb_028227_020 Hb_028227_020 Hb_003398_130--Hb_028227_020 Hb_003398_130--Hb_005306_170 Hb_002685_190 Hb_002685_190 Hb_001278_110--Hb_002685_190 Hb_003266_050 Hb_003266_050 Hb_001278_110--Hb_003266_050 Hb_004297_070 Hb_004297_070 Hb_001278_110--Hb_004297_070 Hb_181288_010 Hb_181288_010 Hb_001278_110--Hb_181288_010 Hb_000300_610 Hb_000300_610 Hb_001278_110--Hb_000300_610 Hb_012725_050 Hb_012725_050 Hb_005306_170--Hb_012725_050 Hb_001662_150 Hb_001662_150 Hb_005306_170--Hb_001662_150 Hb_005306_170--Hb_028227_020 Hb_001157_020 Hb_001157_020 Hb_005306_170--Hb_001157_020 Hb_000329_140 Hb_000329_140 Hb_005306_170--Hb_000329_140 Hb_005306_170--Hb_000486_010 Hb_011360_140 Hb_011360_140 Hb_000392_440--Hb_011360_140 Hb_005993_040 Hb_005993_040 Hb_000392_440--Hb_005993_040 Hb_010661_030 Hb_010661_030 Hb_000392_440--Hb_010661_030 Hb_002928_130 Hb_002928_130 Hb_000392_440--Hb_002928_130 Hb_000015_080 Hb_000015_080 Hb_000392_440--Hb_000015_080 Hb_011571_020 Hb_011571_020 Hb_000392_440--Hb_011571_020 Hb_000486_010--Hb_000300_610 Hb_063090_010 Hb_063090_010 Hb_000486_010--Hb_063090_010 Hb_003333_060 Hb_003333_060 Hb_000486_010--Hb_003333_060 Hb_000627_030 Hb_000627_030 Hb_000486_010--Hb_000627_030 Hb_000486_010--Hb_000329_140 Hb_024682_010 Hb_024682_010 Hb_000887_020--Hb_024682_010 Hb_003607_050 Hb_003607_050 Hb_000887_020--Hb_003607_050 Hb_000251_070 Hb_000251_070 Hb_000887_020--Hb_000251_070 Hb_004934_110 Hb_004934_110 Hb_000887_020--Hb_004934_110 Hb_004204_120 Hb_004204_120 Hb_000887_020--Hb_004204_120 Hb_003125_190 Hb_003125_190 Hb_000887_020--Hb_003125_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
87.0628 17.2772 51.2567 21.9243 91.3356 94.3995
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
129.913 104.85 44.034 39.0663 43.929

CAGE analysis