Hb_002284_110

Information

Type -
Description -
Location Contig2284: 81413-84301
Sequence    

Annotation

kegg
ID sly:101265232
description peptidyl-prolyl cis-trans isomerase FKBP18, chloroplastic
nr
ID XP_010320479.1
description PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP18, chloroplastic isoform X2 [Solanum lycopersicum]
swissprot
ID Q9LM71
description Peptidyl-prolyl cis-trans isomerase FKBP18, chloroplastic OS=Arabidopsis thaliana GN=FKBP18 PE=1 SV=2
trembl
ID K4BVZ3
description Peptidyl-prolyl cis-trans isomerase OS=Solanum lycopersicum GN=Solyc04g082660.2 PE=4 SV=1
Gene Ontology
ID GO:0031977
description peptidyl-prolyl cis-trans isomerase chloroplastic isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002284_110 0.0 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP18, chloroplastic isoform X2 [Solanum lycopersicum]
2 Hb_000599_220 0.1252405735 - - PREDICTED: uncharacterized protein LOC105644022 [Jatropha curcas]
3 Hb_000733_100 0.3142226383 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002173_010 0.3203315582 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
5 Hb_006925_090 0.3244403082 - - PREDICTED: protein HAPLESS 2 [Populus euphratica]
6 Hb_022534_010 0.3264550889 - - hypothetical protein CICLE_v10000066mg [Citrus clementina]
7 Hb_103790_010 0.3322709528 - - PREDICTED: pre-mRNA-processing protein 40A isoform X4 [Jatropha curcas]
8 Hb_000260_150 0.3399380154 - - hypothetical protein POPTR_0344s002001g, partial [Populus trichocarpa]
9 Hb_029622_070 0.3490246806 - - -
10 Hb_129105_010 0.3498092026 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
11 Hb_001638_010 0.3595360747 - - -
12 Hb_000032_530 0.3599433404 - - -
13 Hb_002608_020 0.361674754 transcription factor TF Family: MYB PREDICTED: myb-related protein 305 [Jatropha curcas]
14 Hb_002571_040 0.3620833374 - - hypothetical protein RCOM_1321060 [Ricinus communis]
15 Hb_073096_010 0.3632782652 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 45-like [Jatropha curcas]
16 Hb_180486_010 0.3695342192 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
17 Hb_004453_190 0.3720436768 - - -
18 Hb_003327_040 0.3737931983 - - PREDICTED: ABC transporter G family member 17-like [Jatropha curcas]
19 Hb_000122_240 0.3763482429 - - monovalent cation:proton antiporter, putative [Ricinus communis]
20 Hb_001300_050 0.3804528578 - - -

Gene co-expression network

sample Hb_002284_110 Hb_002284_110 Hb_000599_220 Hb_000599_220 Hb_002284_110--Hb_000599_220 Hb_000733_100 Hb_000733_100 Hb_002284_110--Hb_000733_100 Hb_002173_010 Hb_002173_010 Hb_002284_110--Hb_002173_010 Hb_006925_090 Hb_006925_090 Hb_002284_110--Hb_006925_090 Hb_022534_010 Hb_022534_010 Hb_002284_110--Hb_022534_010 Hb_103790_010 Hb_103790_010 Hb_002284_110--Hb_103790_010 Hb_000599_220--Hb_000733_100 Hb_129105_010 Hb_129105_010 Hb_000599_220--Hb_129105_010 Hb_000599_220--Hb_002173_010 Hb_002571_040 Hb_002571_040 Hb_000599_220--Hb_002571_040 Hb_000599_220--Hb_006925_090 Hb_011942_010 Hb_011942_010 Hb_000733_100--Hb_011942_010 Hb_130613_010 Hb_130613_010 Hb_000733_100--Hb_130613_010 Hb_040747_010 Hb_040747_010 Hb_000733_100--Hb_040747_010 Hb_000363_330 Hb_000363_330 Hb_000733_100--Hb_000363_330 Hb_169505_010 Hb_169505_010 Hb_000733_100--Hb_169505_010 Hb_002388_010 Hb_002388_010 Hb_000733_100--Hb_002388_010 Hb_006120_080 Hb_006120_080 Hb_002173_010--Hb_006120_080 Hb_000717_040 Hb_000717_040 Hb_002173_010--Hb_000717_040 Hb_006018_050 Hb_006018_050 Hb_002173_010--Hb_006018_050 Hb_178793_010 Hb_178793_010 Hb_002173_010--Hb_178793_010 Hb_001953_140 Hb_001953_140 Hb_002173_010--Hb_001953_140 Hb_000072_190 Hb_000072_190 Hb_002173_010--Hb_000072_190 Hb_011505_010 Hb_011505_010 Hb_006925_090--Hb_011505_010 Hb_000260_150 Hb_000260_150 Hb_006925_090--Hb_000260_150 Hb_026527_040 Hb_026527_040 Hb_006925_090--Hb_026527_040 Hb_104498_030 Hb_104498_030 Hb_006925_090--Hb_104498_030 Hb_171062_010 Hb_171062_010 Hb_006925_090--Hb_171062_010 Hb_127404_010 Hb_127404_010 Hb_022534_010--Hb_127404_010 Hb_008092_030 Hb_008092_030 Hb_022534_010--Hb_008092_030 Hb_187697_010 Hb_187697_010 Hb_022534_010--Hb_187697_010 Hb_003637_020 Hb_003637_020 Hb_022534_010--Hb_003637_020 Hb_000960_020 Hb_000960_020 Hb_022534_010--Hb_000960_020 Hb_001178_040 Hb_001178_040 Hb_022534_010--Hb_001178_040 Hb_068804_080 Hb_068804_080 Hb_103790_010--Hb_068804_080 Hb_006541_090 Hb_006541_090 Hb_103790_010--Hb_006541_090 Hb_000264_290 Hb_000264_290 Hb_103790_010--Hb_000264_290 Hb_160203_010 Hb_160203_010 Hb_103790_010--Hb_160203_010 Hb_007136_020 Hb_007136_020 Hb_103790_010--Hb_007136_020 Hb_001300_050 Hb_001300_050 Hb_103790_010--Hb_001300_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.264611 0.0592893 0.126414 0 0.193275
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.140914 0 0 0

CAGE analysis