Hb_002284_220

Information

Type -
Description -
Location Contig2284: 158451-160211
Sequence    

Annotation

kegg
ID rcu:RCOM_1601660
description hypothetical protein
nr
ID XP_012073622.1
description PREDICTED: F-box/kelch-repeat protein At5g42360-like [Jatropha curcas]
swissprot
ID Q9FII1
description F-box/kelch-repeat protein At5g42360 OS=Arabidopsis thaliana GN=At5g42360 PE=2 SV=1
trembl
ID A0A067KWZ4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08061 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23816: 157463-160482
cDNA
(Sanger)
(ID:Location)		 022_F11.ab1: 159333-160039

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002284_220 0.0 - - PREDICTED: F-box/kelch-repeat protein At5g42360-like [Jatropha curcas]
2 Hb_005470_030 0.0959014346 - - PREDICTED: probable galactinol--sucrose galactosyltransferase 2 isoform X2 [Jatropha curcas]
3 Hb_002486_020 0.1089736024 - - ATP binding protein, putative [Ricinus communis]
4 Hb_000110_060 0.1456767629 - - PREDICTED: uncharacterized protein LOC105636258 [Jatropha curcas]
5 Hb_033312_080 0.1565796945 - - aldose-1-epimerase, putative [Ricinus communis]
6 Hb_000108_240 0.1585705529 - - hypothetical protein Csa_1G600150 [Cucumis sativus]
7 Hb_010172_110 0.1587260205 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
8 Hb_000331_350 0.1600527453 - - hypothetical protein JCGZ_11337 [Jatropha curcas]
9 Hb_000477_040 0.1601273459 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002759_070 0.163640995 - - PREDICTED: nucleobase-ascorbate transporter 7 [Jatropha curcas]
11 Hb_020437_020 0.1693876332 - - hypothetical protein POPTR_0001s01410g, partial [Populus trichocarpa]
12 Hb_003226_200 0.1700574815 - - magnesium/proton exchanger, putative [Ricinus communis]
13 Hb_000622_060 0.1786482102 - - PREDICTED: uncharacterized protein At5g05190-like isoform X1 [Jatropha curcas]
14 Hb_001369_630 0.1811682216 - - PREDICTED: UDP-glucuronate 4-epimerase 3-like [Jatropha curcas]
15 Hb_001329_070 0.1826859039 - - Glycogen synthase kinase-3 beta, putative [Ricinus communis]
16 Hb_000193_340 0.1836353249 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 isoform X1 [Jatropha curcas]
17 Hb_001817_100 0.1838521498 - - PREDICTED: deoxyhypusine hydroxylase [Jatropha curcas]
18 Hb_000181_460 0.184755057 - - cmp-2-keto-3-deoctulosonate (cmp-kdo) cytidyltransferase, putative [Ricinus communis]
19 Hb_003878_050 0.1860513263 - - PREDICTED: peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A-like [Jatropha curcas]
20 Hb_161396_010 0.1873863798 - - hypothetical protein F383_26394 [Gossypium arboreum]

Gene co-expression network

sample Hb_002284_220 Hb_002284_220 Hb_005470_030 Hb_005470_030 Hb_002284_220--Hb_005470_030 Hb_002486_020 Hb_002486_020 Hb_002284_220--Hb_002486_020 Hb_000110_060 Hb_000110_060 Hb_002284_220--Hb_000110_060 Hb_033312_080 Hb_033312_080 Hb_002284_220--Hb_033312_080 Hb_000108_240 Hb_000108_240 Hb_002284_220--Hb_000108_240 Hb_010172_110 Hb_010172_110 Hb_002284_220--Hb_010172_110 Hb_005470_030--Hb_000110_060 Hb_000477_040 Hb_000477_040 Hb_005470_030--Hb_000477_040 Hb_005470_030--Hb_002486_020 Hb_000849_120 Hb_000849_120 Hb_005470_030--Hb_000849_120 Hb_020437_020 Hb_020437_020 Hb_005470_030--Hb_020437_020 Hb_002486_020--Hb_000110_060 Hb_002759_070 Hb_002759_070 Hb_002486_020--Hb_002759_070 Hb_003226_200 Hb_003226_200 Hb_002486_020--Hb_003226_200 Hb_000768_150 Hb_000768_150 Hb_002486_020--Hb_000768_150 Hb_002615_030 Hb_002615_030 Hb_000110_060--Hb_002615_030 Hb_003371_070 Hb_003371_070 Hb_000110_060--Hb_003371_070 Hb_000110_060--Hb_000849_120 Hb_001619_060 Hb_001619_060 Hb_000110_060--Hb_001619_060 Hb_000181_460 Hb_000181_460 Hb_000110_060--Hb_000181_460 Hb_021943_090 Hb_021943_090 Hb_000110_060--Hb_021943_090 Hb_005545_020 Hb_005545_020 Hb_033312_080--Hb_005545_020 Hb_033312_080--Hb_002486_020 Hb_003299_020 Hb_003299_020 Hb_033312_080--Hb_003299_020 Hb_000406_030 Hb_000406_030 Hb_033312_080--Hb_000406_030 Hb_007621_010 Hb_007621_010 Hb_033312_080--Hb_007621_010 Hb_048476_140 Hb_048476_140 Hb_000108_240--Hb_048476_140 Hb_003408_010 Hb_003408_010 Hb_000108_240--Hb_003408_010 Hb_004041_050 Hb_004041_050 Hb_000108_240--Hb_004041_050 Hb_005622_020 Hb_005622_020 Hb_000108_240--Hb_005622_020 Hb_001180_010 Hb_001180_010 Hb_000108_240--Hb_001180_010 Hb_004650_030 Hb_004650_030 Hb_000108_240--Hb_004650_030 Hb_000331_350 Hb_000331_350 Hb_010172_110--Hb_000331_350 Hb_007002_040 Hb_007002_040 Hb_010172_110--Hb_007002_040 Hb_000189_170 Hb_000189_170 Hb_010172_110--Hb_000189_170 Hb_002811_280 Hb_002811_280 Hb_010172_110--Hb_002811_280 Hb_000310_120 Hb_000310_120 Hb_010172_110--Hb_000310_120 Hb_001329_070 Hb_001329_070 Hb_010172_110--Hb_001329_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.881825 1.60239 20.9587 27.7539 0.322498 0.431604
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.13675 7.02124 12.1824 15.4611 22.7063

CAGE analysis