Hb_002284_230

Information

Type -
Description -
Location Contig2284: 162894-164310
Sequence    

Annotation

kegg
ID cit:102623240
description hypothetical protein
nr
ID XP_012073629.1
description PREDICTED: uncharacterized protein At5g43822 [Jatropha curcas]
swissprot
ID Q6NPG7
description Uncharacterized protein At5g43822 OS=Arabidopsis thaliana GN=At5g43822 PE=2 SV=1
trembl
ID A0A067GZY6
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g028912mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23820: 162046-163920 , PASA_asmbl_23821: 162914-163373
cDNA
(Sanger)
(ID:Location)		 043_M06r.ab1: 164638-166271

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002284_230 0.0 - - PREDICTED: uncharacterized protein At5g43822 [Jatropha curcas]
2 Hb_003697_050 0.0637348385 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 13 [Jatropha curcas]
3 Hb_019654_030 0.0850238217 - - maoC-like dehydratase domain-containing family protein [Populus trichocarpa]
4 Hb_000046_350 0.0851937684 - - conserved hypothetical protein [Ricinus communis]
5 Hb_025098_010 0.0853481298 - - PREDICTED: protoheme IX farnesyltransferase, mitochondrial isoform X2 [Jatropha curcas]
6 Hb_003633_050 0.0873256443 - - hypothetical protein B456_013G125900 [Gossypium raimondii]
7 Hb_003126_070 0.0888429485 - - PREDICTED: 3-dehydroquinate synthase, chloroplastic [Jatropha curcas]
8 Hb_011344_190 0.0900088358 - - PREDICTED: maspardin [Jatropha curcas]
9 Hb_000028_350 0.0900790391 - - PREDICTED: uncharacterized protein LOC105634642 [Jatropha curcas]
10 Hb_001390_130 0.0904927911 - - hypothetical protein POPTR_0009s08590g [Populus trichocarpa]
11 Hb_006277_110 0.0923295944 - - protein with unknown function [Ricinus communis]
12 Hb_152371_010 0.0932842863 - - RNA-binding KH domain-containing protein [Theobroma cacao]
13 Hb_002111_040 0.09382806 - - hypothetical protein JCGZ_16989 [Jatropha curcas]
14 Hb_000363_360 0.0942124998 - - hypothetical protein PRUPE_ppa009146mg [Prunus persica]
15 Hb_076233_040 0.0942850226 - - PREDICTED: ATP synthase subunit gamma, mitochondrial [Jatropha curcas]
16 Hb_003376_250 0.0943195853 - - Transducin/WD40 repeat-like superfamily protein [Theobroma cacao]
17 Hb_000212_450 0.094512693 - - PREDICTED: basic leucine zipper and W2 domain-containing protein 2 [Jatropha curcas]
18 Hb_002735_050 0.095634663 - - PREDICTED: thiamine-repressible mitochondrial transport protein THI74 isoform X1 [Jatropha curcas]
19 Hb_001006_020 0.0959169676 - - PREDICTED: WW domain-binding protein 4 [Jatropha curcas]
20 Hb_009193_030 0.0976013478 - - hypothetical protein POPTR_0010s16620g [Populus trichocarpa]

Gene co-expression network

sample Hb_002284_230 Hb_002284_230 Hb_003697_050 Hb_003697_050 Hb_002284_230--Hb_003697_050 Hb_019654_030 Hb_019654_030 Hb_002284_230--Hb_019654_030 Hb_000046_350 Hb_000046_350 Hb_002284_230--Hb_000046_350 Hb_025098_010 Hb_025098_010 Hb_002284_230--Hb_025098_010 Hb_003633_050 Hb_003633_050 Hb_002284_230--Hb_003633_050 Hb_003126_070 Hb_003126_070 Hb_002284_230--Hb_003126_070 Hb_001268_050 Hb_001268_050 Hb_003697_050--Hb_001268_050 Hb_002735_050 Hb_002735_050 Hb_003697_050--Hb_002735_050 Hb_003697_050--Hb_025098_010 Hb_001390_130 Hb_001390_130 Hb_003697_050--Hb_001390_130 Hb_094836_010 Hb_094836_010 Hb_003697_050--Hb_094836_010 Hb_009193_030 Hb_009193_030 Hb_019654_030--Hb_009193_030 Hb_000363_360 Hb_000363_360 Hb_019654_030--Hb_000363_360 Hb_005306_180 Hb_005306_180 Hb_019654_030--Hb_005306_180 Hb_019654_030--Hb_003633_050 Hb_000291_080 Hb_000291_080 Hb_019654_030--Hb_000291_080 Hb_000072_180 Hb_000072_180 Hb_000046_350--Hb_000072_180 Hb_004672_010 Hb_004672_010 Hb_000046_350--Hb_004672_010 Hb_001222_080 Hb_001222_080 Hb_000046_350--Hb_001222_080 Hb_001284_030 Hb_001284_030 Hb_000046_350--Hb_001284_030 Hb_148113_010 Hb_148113_010 Hb_000046_350--Hb_148113_010 Hb_006420_100 Hb_006420_100 Hb_000046_350--Hb_006420_100 Hb_185255_010 Hb_185255_010 Hb_025098_010--Hb_185255_010 Hb_000310_090 Hb_000310_090 Hb_025098_010--Hb_000310_090 Hb_001307_030 Hb_001307_030 Hb_025098_010--Hb_001307_030 Hb_005144_050 Hb_005144_050 Hb_025098_010--Hb_005144_050 Hb_002289_080 Hb_002289_080 Hb_025098_010--Hb_002289_080 Hb_008841_020 Hb_008841_020 Hb_025098_010--Hb_008841_020 Hb_000096_160 Hb_000096_160 Hb_003633_050--Hb_000096_160 Hb_001085_240 Hb_001085_240 Hb_003633_050--Hb_001085_240 Hb_005914_170 Hb_005914_170 Hb_003633_050--Hb_005914_170 Hb_011344_190 Hb_011344_190 Hb_003633_050--Hb_011344_190 Hb_003376_250 Hb_003376_250 Hb_003633_050--Hb_003376_250 Hb_076233_040 Hb_076233_040 Hb_003126_070--Hb_076233_040 Hb_003291_020 Hb_003291_020 Hb_003126_070--Hb_003291_020 Hb_000300_430 Hb_000300_430 Hb_003126_070--Hb_000300_430 Hb_008232_010 Hb_008232_010 Hb_003126_070--Hb_008232_010 Hb_001123_160 Hb_001123_160 Hb_003126_070--Hb_001123_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.19021 1.4638 1.62603 6.69642 1.90775 3.95759
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.25074 5.67798 5.59794 4.88567 4.11709

CAGE analysis