Hb_002284_250

Information

Type -
Description -
Location Contig2284: 167148-179546
Sequence    

Annotation

kegg
ID rcu:RCOM_1601620
description calcium ion binding protein, putative
nr
ID XP_012073633.1
description PREDICTED: epidermal growth factor receptor substrate 15-like 1 [Jatropha curcas]
swissprot
ID Q9HGL2
description Uncharacterized calcium-binding protein C800.10c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC800.10c PE=3 SV=1
trembl
ID B9R8Q3
description Calcium ion binding protein, putative OS=Ricinus communis GN=RCOM_1601620 PE=4 SV=1
Gene Ontology
ID GO:0005509
description low quality protein: epidermal growth factor receptor substrate 15-like 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23824: 167087-179475 , PASA_asmbl_23825: 173900-177167
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002284_250 0.0 - - PREDICTED: epidermal growth factor receptor substrate 15-like 1 [Jatropha curcas]
2 Hb_001437_190 0.0552231525 - - ABC transporter family protein [Hevea brasiliensis]
3 Hb_001258_110 0.0685798159 - - transporter, putative [Ricinus communis]
4 Hb_000062_020 0.0732677428 - - ubiquitin-protein ligase, putative [Ricinus communis]
5 Hb_001821_150 0.0745584634 - - PREDICTED: potassium transporter 7-like [Jatropha curcas]
6 Hb_003912_070 0.0785544438 - - PREDICTED: nuclear pore complex protein NUP85 [Jatropha curcas]
7 Hb_004531_120 0.0803799123 - - PREDICTED: uncharacterized protein LOC105635025 [Jatropha curcas]
8 Hb_000130_180 0.0810978053 - - PREDICTED: GPI inositol-deacylase-like isoform X2 [Jatropha curcas]
9 Hb_001442_060 0.0834422575 - - PREDICTED: uncharacterized protein LOC105638091 isoform X1 [Jatropha curcas]
10 Hb_039946_050 0.0846128253 - - catalytic, putative [Ricinus communis]
11 Hb_012286_040 0.0851428509 - - PREDICTED: pre-mRNA-splicing factor RSE1 [Jatropha curcas]
12 Hb_031527_030 0.0862180348 - - PREDICTED: ribosomal RNA processing protein 1 homolog [Jatropha curcas]
13 Hb_001195_470 0.0866522924 - - PREDICTED: uncharacterized membrane protein At1g75140 [Jatropha curcas]
14 Hb_011849_040 0.0868078509 - - ubiquitin-protein ligase, putative [Ricinus communis]
15 Hb_041327_010 0.0880187884 - - PREDICTED: la-related protein 1A isoform X1 [Jatropha curcas]
16 Hb_000680_110 0.0891909579 - - Endosomal P24A protein precursor, putative [Ricinus communis]
17 Hb_012092_060 0.089307365 - - PREDICTED: KH domain-containing protein At4g18375 [Jatropha curcas]
18 Hb_004109_370 0.0902588099 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
19 Hb_000230_260 0.0909690523 - - PREDICTED: putative E3 ubiquitin-protein ligase RF298 [Jatropha curcas]
20 Hb_001188_020 0.0910419154 - - PREDICTED: E3 SUMO-protein ligase SIZ1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002284_250 Hb_002284_250 Hb_001437_190 Hb_001437_190 Hb_002284_250--Hb_001437_190 Hb_001258_110 Hb_001258_110 Hb_002284_250--Hb_001258_110 Hb_000062_020 Hb_000062_020 Hb_002284_250--Hb_000062_020 Hb_001821_150 Hb_001821_150 Hb_002284_250--Hb_001821_150 Hb_003912_070 Hb_003912_070 Hb_002284_250--Hb_003912_070 Hb_004531_120 Hb_004531_120 Hb_002284_250--Hb_004531_120 Hb_000237_050 Hb_000237_050 Hb_001437_190--Hb_000237_050 Hb_000237_040 Hb_000237_040 Hb_001437_190--Hb_000237_040 Hb_001195_470 Hb_001195_470 Hb_001437_190--Hb_001195_470 Hb_001437_190--Hb_000062_020 Hb_001437_190--Hb_001821_150 Hb_001014_210 Hb_001014_210 Hb_001258_110--Hb_001014_210 Hb_005663_110 Hb_005663_110 Hb_001258_110--Hb_005663_110 Hb_000130_180 Hb_000130_180 Hb_001258_110--Hb_000130_180 Hb_015026_130 Hb_015026_130 Hb_001258_110--Hb_015026_130 Hb_001434_080 Hb_001434_080 Hb_001258_110--Hb_001434_080 Hb_001442_060 Hb_001442_060 Hb_000062_020--Hb_001442_060 Hb_004109_230 Hb_004109_230 Hb_000062_020--Hb_004109_230 Hb_000062_020--Hb_004531_120 Hb_001109_060 Hb_001109_060 Hb_000062_020--Hb_001109_060 Hb_012760_100 Hb_012760_100 Hb_000062_020--Hb_012760_100 Hb_000161_210 Hb_000161_210 Hb_001821_150--Hb_000161_210 Hb_001821_150--Hb_000130_180 Hb_003038_040 Hb_003038_040 Hb_001821_150--Hb_003038_040 Hb_007982_030 Hb_007982_030 Hb_001821_150--Hb_007982_030 Hb_003417_010 Hb_003417_010 Hb_001821_150--Hb_003417_010 Hb_012092_060 Hb_012092_060 Hb_003912_070--Hb_012092_060 Hb_005568_040 Hb_005568_040 Hb_003912_070--Hb_005568_040 Hb_011287_050 Hb_011287_050 Hb_003912_070--Hb_011287_050 Hb_000331_580 Hb_000331_580 Hb_003912_070--Hb_000331_580 Hb_043362_010 Hb_043362_010 Hb_003912_070--Hb_043362_010 Hb_000479_240 Hb_000479_240 Hb_003912_070--Hb_000479_240 Hb_000680_110 Hb_000680_110 Hb_004531_120--Hb_000680_110 Hb_000139_130 Hb_000139_130 Hb_004531_120--Hb_000139_130 Hb_004531_120--Hb_004109_230 Hb_004531_120--Hb_000130_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.84546 17.6058 8.87596 23.2956 13.8584 19.0927
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.89649 6.19685 9.88467 19.5458 15.0522

CAGE analysis