Hb_002284_260

Information

Type -
Description -
Location Contig2284: 204918-214743
Sequence    

Annotation

kegg
ID rcu:RCOM_1601590
description brca1 interacting protein helicase 1 brip1, putative
nr
ID XP_002510693.1
description brca1 interacting protein helicase 1 brip1, putative [Ricinus communis]
swissprot
ID Q3YK19
description Fanconi anemia group J protein homolog OS=Gallus gallus GN=BRIP1 PE=2 SV=1
trembl
ID B9R8Q0
description Brca1 interacting protein helicase 1 brip1, putative OS=Ricinus communis GN=RCOM_1601590 PE=4 SV=1
Gene Ontology
ID GO:0003677
description fanconi anemia group j protein homolog isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23826: 206787-206984 , PASA_asmbl_23827: 212333-213294 , PASA_asmbl_23828: 213613-213901
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002284_260 0.0 - - brca1 interacting protein helicase 1 brip1, putative [Ricinus communis]
2 Hb_093458_020 0.0942841399 desease resistance Gene Name: AAA PREDICTED: chromosome transmission fidelity protein 18 homolog [Jatropha curcas]
3 Hb_124677_050 0.10202646 - - conserved hypothetical protein [Ricinus communis]
4 Hb_004007_130 0.1091851273 - - PREDICTED: uncharacterized protein LOC105639843 [Jatropha curcas]
5 Hb_002871_130 0.1105239793 - - PREDICTED: non-structural maintenance of chromosomes element 4 homolog A isoform X2 [Jatropha curcas]
6 Hb_003360_010 0.1105717862 - - Bipolar kinesin KRP-130, putative [Ricinus communis]
7 Hb_000077_110 0.1170583156 - - PREDICTED: uncharacterized protein LOC105646935 [Jatropha curcas]
8 Hb_005183_150 0.1280301283 - - PREDICTED: protein CYPRO4 [Jatropha curcas]
9 Hb_024682_030 0.1296245888 - - PREDICTED: DNA replication licensing factor MCM2 [Jatropha curcas]
10 Hb_004968_040 0.1297714363 - - PREDICTED: rop guanine nucleotide exchange factor 5 [Jatropha curcas]
11 Hb_020301_020 0.1324520995 - - calmodulin binding protein, putative [Ricinus communis]
12 Hb_000483_080 0.1336812572 - - hypothetical protein CISIN_1g000833mg [Citrus sinensis]
13 Hb_011861_040 0.1340679227 - - PREDICTED: pheromone-processing carboxypeptidase KEX1-like [Jatropha curcas]
14 Hb_021576_090 0.1367092059 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002030_130 0.138326656 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]
16 Hb_004531_080 0.1388751186 - - hypothetical protein RCOM_1491960 [Ricinus communis]
17 Hb_001322_160 0.1418382533 - - hypothetical protein JCGZ_03472 [Jatropha curcas]
18 Hb_001524_120 0.1435818779 - - myo-inositol-1 phosphate synthase [Hevea brasiliensis]
19 Hb_000003_060 0.1451314874 transcription factor TF Family: HMG DNA-binding protein MNB1B, putative [Ricinus communis]
20 Hb_000260_670 0.1452414413 - - PREDICTED: serine/threonine-protein kinase TIO isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002284_260 Hb_002284_260 Hb_093458_020 Hb_093458_020 Hb_002284_260--Hb_093458_020 Hb_124677_050 Hb_124677_050 Hb_002284_260--Hb_124677_050 Hb_004007_130 Hb_004007_130 Hb_002284_260--Hb_004007_130 Hb_002871_130 Hb_002871_130 Hb_002284_260--Hb_002871_130 Hb_003360_010 Hb_003360_010 Hb_002284_260--Hb_003360_010 Hb_000077_110 Hb_000077_110 Hb_002284_260--Hb_000077_110 Hb_000566_130 Hb_000566_130 Hb_093458_020--Hb_000566_130 Hb_093458_020--Hb_002871_130 Hb_000003_060 Hb_000003_060 Hb_093458_020--Hb_000003_060 Hb_093458_020--Hb_000077_110 Hb_004968_040 Hb_004968_040 Hb_093458_020--Hb_004968_040 Hb_124677_050--Hb_003360_010 Hb_007632_210 Hb_007632_210 Hb_124677_050--Hb_007632_210 Hb_005183_150 Hb_005183_150 Hb_124677_050--Hb_005183_150 Hb_002311_090 Hb_002311_090 Hb_124677_050--Hb_002311_090 Hb_003228_050 Hb_003228_050 Hb_124677_050--Hb_003228_050 Hb_004007_130--Hb_002871_130 Hb_004007_130--Hb_003360_010 Hb_004531_080 Hb_004531_080 Hb_004007_130--Hb_004531_080 Hb_006970_130 Hb_006970_130 Hb_004007_130--Hb_006970_130 Hb_024682_030 Hb_024682_030 Hb_004007_130--Hb_024682_030 Hb_002871_130--Hb_004531_080 Hb_011861_040 Hb_011861_040 Hb_002871_130--Hb_011861_040 Hb_000483_080 Hb_000483_080 Hb_002871_130--Hb_000483_080 Hb_003360_010--Hb_024682_030 Hb_000260_670 Hb_000260_670 Hb_003360_010--Hb_000260_670 Hb_000431_100 Hb_000431_100 Hb_003360_010--Hb_000431_100 Hb_001524_120 Hb_001524_120 Hb_003360_010--Hb_001524_120 Hb_003360_010--Hb_005183_150 Hb_000077_110--Hb_000483_080 Hb_000307_220 Hb_000307_220 Hb_000077_110--Hb_000307_220 Hb_000077_110--Hb_000566_130 Hb_004920_050 Hb_004920_050 Hb_000077_110--Hb_004920_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0345439 0.09656 1.64223 1.04244 0.0189464 0.0950439
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0327001 0.0428898 0.0164735 0.52323 0.202188

CAGE analysis