Hb_002284_310

Information

Type -
Description -
Location Contig2284: 246712-251973
Sequence    

Annotation

kegg
ID rcu:RCOM_1601220
description bromodomain-containing protein (EC:2.3.1.48)
nr
ID XP_012073643.1
description PREDICTED: uncharacterized protein LOC105635220 isoform X2 [Jatropha curcas]
swissprot
ID Q9ULD4
description Bromodomain and PHD finger-containing protein 3 OS=Homo sapiens GN=BRPF3 PE=1 SV=2
trembl
ID A0A067KY78
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08075 PE=4 SV=1
Gene Ontology
ID GO:0016746
description dna-binding bromodomain-containing

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23843: 246743-247620 , PASA_asmbl_23844: 246743-250840
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002284_310 0.0 - - PREDICTED: uncharacterized protein LOC105635220 isoform X2 [Jatropha curcas]
2 Hb_000603_230 0.1109205603 - - copper-transporting atpase paa1, putative [Ricinus communis]
3 Hb_003992_170 0.1126418767 - - PREDICTED: glucan endo-1,3-beta-glucosidase 14-like [Populus euphratica]
4 Hb_000331_460 0.1126821909 - - PREDICTED: probable ubiquitin-like-specific protease 2A isoform X1 [Jatropha curcas]
5 Hb_002871_190 0.1212006032 - - PREDICTED: uncharacterized protein LOC105628867 [Jatropha curcas]
6 Hb_004225_080 0.1323027148 - - -
7 Hb_004346_030 0.1337441467 - - sucrose phosphate phosphatase, putative [Ricinus communis]
8 Hb_034013_020 0.1356673494 - - PREDICTED: protein trichome birefringence-like 11 [Jatropha curcas]
9 Hb_004191_020 0.1358849337 - - PREDICTED: cysteine synthase [Jatropha curcas]
10 Hb_001545_100 0.1371311458 - - PREDICTED: probable F-actin-capping protein subunit beta [Vitis vinifera]
11 Hb_000174_030 0.1377019406 - - hypothetical protein RCOM_1077370 [Ricinus communis]
12 Hb_171376_010 0.1382282764 - - PREDICTED: uncharacterized protein LOC105630877 isoform X1 [Jatropha curcas]
13 Hb_175557_010 0.1382347195 - - glutamate-1-semialdehyde 2,1-aminomutase, putative [Ricinus communis]
14 Hb_000032_440 0.1383632494 - - protein with unknown function [Ricinus communis]
15 Hb_000335_030 0.1417226282 - - PREDICTED: pentatricopeptide repeat-containing protein At2g17033 [Jatropha curcas]
16 Hb_001946_330 0.14201723 - - PREDICTED: transmembrane protein 128 [Jatropha curcas]
17 Hb_075751_010 0.1423485621 - - PREDICTED: uncharacterized protein LOC105635783 isoform X2 [Jatropha curcas]
18 Hb_000853_190 0.1439408613 - - mitochondrial carrier protein, putative [Ricinus communis]
19 Hb_000617_200 0.1443586481 - - f-actin capping protein alpha, putative [Ricinus communis]
20 Hb_000208_120 0.14466596 - - PREDICTED: CAP-Gly domain-containing linker protein 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_002284_310 Hb_002284_310 Hb_000603_230 Hb_000603_230 Hb_002284_310--Hb_000603_230 Hb_003992_170 Hb_003992_170 Hb_002284_310--Hb_003992_170 Hb_000331_460 Hb_000331_460 Hb_002284_310--Hb_000331_460 Hb_002871_190 Hb_002871_190 Hb_002284_310--Hb_002871_190 Hb_004225_080 Hb_004225_080 Hb_002284_310--Hb_004225_080 Hb_004346_030 Hb_004346_030 Hb_002284_310--Hb_004346_030 Hb_175557_010 Hb_175557_010 Hb_000603_230--Hb_175557_010 Hb_075751_010 Hb_075751_010 Hb_000603_230--Hb_075751_010 Hb_002600_090 Hb_002600_090 Hb_000603_230--Hb_002600_090 Hb_000603_230--Hb_002871_190 Hb_003082_030 Hb_003082_030 Hb_000603_230--Hb_003082_030 Hb_010931_130 Hb_010931_130 Hb_000603_230--Hb_010931_130 Hb_000059_050 Hb_000059_050 Hb_003992_170--Hb_000059_050 Hb_001946_330 Hb_001946_330 Hb_003992_170--Hb_001946_330 Hb_000749_270 Hb_000749_270 Hb_003992_170--Hb_000749_270 Hb_004079_030 Hb_004079_030 Hb_003992_170--Hb_004079_030 Hb_000836_040 Hb_000836_040 Hb_003992_170--Hb_000836_040 Hb_001004_150 Hb_001004_150 Hb_000331_460--Hb_001004_150 Hb_000032_440 Hb_000032_440 Hb_000331_460--Hb_000032_440 Hb_001545_100 Hb_001545_100 Hb_000331_460--Hb_001545_100 Hb_000331_460--Hb_000603_230 Hb_000331_460--Hb_004225_080 Hb_003728_060 Hb_003728_060 Hb_002871_190--Hb_003728_060 Hb_026889_030 Hb_026889_030 Hb_002871_190--Hb_026889_030 Hb_050514_010 Hb_050514_010 Hb_002871_190--Hb_050514_010 Hb_010361_010 Hb_010361_010 Hb_002871_190--Hb_010361_010 Hb_002871_190--Hb_002600_090 Hb_000827_050 Hb_000827_050 Hb_002871_190--Hb_000827_050 Hb_004225_080--Hb_001545_100 Hb_000140_050 Hb_000140_050 Hb_004225_080--Hb_000140_050 Hb_000258_330 Hb_000258_330 Hb_004225_080--Hb_000258_330 Hb_003540_030 Hb_003540_030 Hb_004225_080--Hb_003540_030 Hb_004225_080--Hb_002871_190 Hb_010883_050 Hb_010883_050 Hb_004225_080--Hb_010883_050 Hb_007831_020 Hb_007831_020 Hb_004346_030--Hb_007831_020 Hb_002503_020 Hb_002503_020 Hb_004346_030--Hb_002503_020 Hb_000174_030 Hb_000174_030 Hb_004346_030--Hb_000174_030 Hb_000617_200 Hb_000617_200 Hb_004346_030--Hb_000617_200 Hb_004346_030--Hb_004225_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.24048 1.42813 6.59007 5.95212 2.63617 4.29196
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.59185 6.13148 11.3985 1.48815 8.14067

CAGE analysis