Hb_002286_010

Information

Type -
Description -
Location Contig2286: 42706-44708
Sequence    

Annotation

kegg
ID -
description -
nr
ID ACI05918.1
description kinase-like protein pac.x.7.4, partial [Platanus x acerifolia]
swissprot
ID -
description -
trembl
ID B6D3M1
description Kinase-like protein pac.x.7.4 (Fragment) OS=Platanus acerifolia PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23846: 42546-43307 , PASA_asmbl_23847: 42546-44640
cDNA
(Sanger)
(ID:Location)		 012_E19.ab1: 42546-43010 , 023_N21.ab1: 42568-43141 , 050_C19.ab1: 42568-43141

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002286_010 0.0 - - kinase-like protein pac.x.7.4, partial [Platanus x acerifolia]
2 Hb_000252_130 0.1806739743 - - hypothetical protein POPTR_0011s17240g, partial [Populus trichocarpa]
3 Hb_005656_100 0.1828159427 - - conserved hypothetical protein [Ricinus communis]
4 Hb_004931_100 0.1914405873 - - Actin depolymerizing factor 6 isoform 1 [Theobroma cacao]
5 Hb_000302_290 0.1929591737 - - 40S ribosomal S10-3 -like protein [Gossypium arboreum]
6 Hb_002042_080 0.1945807202 rubber biosynthesis Gene Name: Mevalonate kinase mevalonate kinase [Hevea brasiliensis]
7 Hb_001096_030 0.1975168904 - - uridylate kinase plant, putative [Ricinus communis]
8 Hb_000084_320 0.1984227479 - - PREDICTED: probable small nuclear ribonucleoprotein G [Populus euphratica]
9 Hb_005000_180 0.1995124009 - - hypothetical protein JCGZ_07408 [Jatropha curcas]
10 Hb_000163_210 0.1997351486 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-B [Tarenaya hassleriana]
11 Hb_007254_080 0.2002465225 - - -
12 Hb_000252_110 0.2013545481 - - -
13 Hb_001240_020 0.2019547118 - - PREDICTED: uncharacterized protein LOC105641171 [Jatropha curcas]
14 Hb_001357_120 0.2031064365 - - ubiquitin-activating enzyme E1, putative [Ricinus communis]
15 Hb_000928_130 0.2033870279 - - PREDICTED: protein BOLA4, chloroplastic/mitochondrial [Jatropha curcas]
16 Hb_004724_380 0.2037567223 - - PREDICTED: cold-inducible RNA-binding protein B-like [Jatropha curcas]
17 Hb_000836_130 0.2051231889 - - PREDICTED: uncharacterized protein LOC105642953 isoform X2 [Jatropha curcas]
18 Hb_000178_120 0.2060575825 - - PREDICTED: histone H2B [Jatropha curcas]
19 Hb_002026_120 0.2074379143 - - hypothetical protein CISIN_1g025276mg [Citrus sinensis]
20 Hb_000083_090 0.2078290064 - - immunophilin, putative [Ricinus communis]

Gene co-expression network

sample Hb_002286_010 Hb_002286_010 Hb_000252_130 Hb_000252_130 Hb_002286_010--Hb_000252_130 Hb_005656_100 Hb_005656_100 Hb_002286_010--Hb_005656_100 Hb_004931_100 Hb_004931_100 Hb_002286_010--Hb_004931_100 Hb_000302_290 Hb_000302_290 Hb_002286_010--Hb_000302_290 Hb_002042_080 Hb_002042_080 Hb_002286_010--Hb_002042_080 Hb_001096_030 Hb_001096_030 Hb_002286_010--Hb_001096_030 Hb_002820_010 Hb_002820_010 Hb_000252_130--Hb_002820_010 Hb_000723_190 Hb_000723_190 Hb_000252_130--Hb_000723_190 Hb_003642_050 Hb_003642_050 Hb_000252_130--Hb_003642_050 Hb_005224_010 Hb_005224_010 Hb_000252_130--Hb_005224_010 Hb_000116_420 Hb_000116_420 Hb_000252_130--Hb_000116_420 Hb_001894_170 Hb_001894_170 Hb_000252_130--Hb_001894_170 Hb_000673_020 Hb_000673_020 Hb_005656_100--Hb_000673_020 Hb_001005_080 Hb_001005_080 Hb_005656_100--Hb_001005_080 Hb_003880_030 Hb_003880_030 Hb_005656_100--Hb_003880_030 Hb_007850_080 Hb_007850_080 Hb_005656_100--Hb_007850_080 Hb_013405_140 Hb_013405_140 Hb_005656_100--Hb_013405_140 Hb_000175_030 Hb_000175_030 Hb_005656_100--Hb_000175_030 Hb_004931_100--Hb_005656_100 Hb_002374_400 Hb_002374_400 Hb_004931_100--Hb_002374_400 Hb_004931_100--Hb_001005_080 Hb_002217_230 Hb_002217_230 Hb_004931_100--Hb_002217_230 Hb_004128_110 Hb_004128_110 Hb_004931_100--Hb_004128_110 Hb_000707_020 Hb_000707_020 Hb_004931_100--Hb_000707_020 Hb_001240_020 Hb_001240_020 Hb_000302_290--Hb_001240_020 Hb_005000_180 Hb_005000_180 Hb_000302_290--Hb_005000_180 Hb_062135_020 Hb_062135_020 Hb_000302_290--Hb_062135_020 Hb_000061_130 Hb_000061_130 Hb_000302_290--Hb_000061_130 Hb_147752_010 Hb_147752_010 Hb_000302_290--Hb_147752_010 Hb_002518_290 Hb_002518_290 Hb_000302_290--Hb_002518_290 Hb_001059_120 Hb_001059_120 Hb_002042_080--Hb_001059_120 Hb_000178_120 Hb_000178_120 Hb_002042_080--Hb_000178_120 Hb_002042_080--Hb_147752_010 Hb_002243_060 Hb_002243_060 Hb_002042_080--Hb_002243_060 Hb_007441_260 Hb_007441_260 Hb_002042_080--Hb_007441_260 Hb_002042_080--Hb_001240_020 Hb_005663_120 Hb_005663_120 Hb_001096_030--Hb_005663_120 Hb_001232_140 Hb_001232_140 Hb_001096_030--Hb_001232_140 Hb_001096_030--Hb_005000_180 Hb_000163_210 Hb_000163_210 Hb_001096_030--Hb_000163_210 Hb_023344_050 Hb_023344_050 Hb_001096_030--Hb_023344_050 Hb_005527_040 Hb_005527_040 Hb_001096_030--Hb_005527_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.20801 0.728428 0.869107 0.927744 0.0937802 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.20599 6.68732 4.87206 3.04031 1.95458

CAGE analysis