Hb_002289_070

Information

Type -
Description -
Location Contig2289: 50258-58787
Sequence    

Annotation

kegg
ID rcu:RCOM_0373990
description Magnesium-chelatase subunit H, putative (EC:6.6.1.2)
nr
ID XP_012086160.1
description PREDICTED: magnesium-chelatase subunit ChlH, chloroplastic [Jatropha curcas]
swissprot
ID Q9FNB0
description Magnesium-chelatase subunit ChlH, chloroplastic OS=Arabidopsis thaliana GN=CHLH PE=1 SV=1
trembl
ID A0A067JT94
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21086 PE=4 SV=1
Gene Ontology
ID GO:0016851
description magnesium-chelatase subunit chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23853: 50155-58966 , PASA_asmbl_23854: 50946-51653 , PASA_asmbl_23855: 56547-75649
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002289_070 0.0 - - PREDICTED: magnesium-chelatase subunit ChlH, chloroplastic [Jatropha curcas]
2 Hb_002534_090 0.0419444262 - - geranylgeranyl reductase [Hevea brasiliensis]
3 Hb_014361_120 0.0570717642 - - PREDICTED: BTB/POZ domain-containing protein At5g67385 [Jatropha curcas]
4 Hb_001517_060 0.0573698323 - - phosphoribulose kinase, putative [Ricinus communis]
5 Hb_011381_120 0.0582803852 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 2-like [Jatropha curcas]
6 Hb_002701_250 0.0693671942 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
7 Hb_009093_020 0.0695468908 - - PREDICTED: uncharacterized protein LOC105642100 [Jatropha curcas]
8 Hb_000352_230 0.0786417165 - - PREDICTED: glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic isoform X2 [Jatropha curcas]
9 Hb_000307_100 0.0812120846 - - Plastocyanin A, chloroplast precursor, putative [Ricinus communis]
10 Hb_009771_090 0.0812711331 - - -
11 Hb_000009_470 0.0825869515 - - Oxygen-evolving enhancer protein 1, chloroplast precursor, putative [Ricinus communis]
12 Hb_002413_050 0.0837095574 - - hypothetical protein POPTR_0018s06150g [Populus trichocarpa]
13 Hb_000545_180 0.0846613003 - - Photosystem II stability/assembly factor HCF136, chloroplast precursor, putative [Ricinus communis]
14 Hb_000098_040 0.0871896317 - - Ferredoxin-2, chloroplast precursor, putative [Ricinus communis]
15 Hb_000826_010 0.0878216813 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000111_460 0.0885642285 - - PREDICTED: uncharacterized protein LOC105631266 [Jatropha curcas]
17 Hb_002818_130 0.0895889763 - - cytochrome P450, putative [Ricinus communis]
18 Hb_001310_020 0.0898241834 - - PREDICTED: cyclin-D5-1-like isoform X2 [Jatropha curcas]
19 Hb_004920_080 0.0900524806 - - PREDICTED: calvin cycle protein CP12-2, chloroplastic-like [Jatropha curcas]
20 Hb_011537_130 0.090216277 - - unnamed protein product [Vitis vinifera]

Gene co-expression network

sample Hb_002289_070 Hb_002289_070 Hb_002534_090 Hb_002534_090 Hb_002289_070--Hb_002534_090 Hb_014361_120 Hb_014361_120 Hb_002289_070--Hb_014361_120 Hb_001517_060 Hb_001517_060 Hb_002289_070--Hb_001517_060 Hb_011381_120 Hb_011381_120 Hb_002289_070--Hb_011381_120 Hb_002701_250 Hb_002701_250 Hb_002289_070--Hb_002701_250 Hb_009093_020 Hb_009093_020 Hb_002289_070--Hb_009093_020 Hb_002413_050 Hb_002413_050 Hb_002534_090--Hb_002413_050 Hb_002534_090--Hb_001517_060 Hb_011537_130 Hb_011537_130 Hb_002534_090--Hb_011537_130 Hb_000009_470 Hb_000009_470 Hb_002534_090--Hb_000009_470 Hb_002534_090--Hb_011381_120 Hb_000545_180 Hb_000545_180 Hb_014361_120--Hb_000545_180 Hb_000352_230 Hb_000352_230 Hb_014361_120--Hb_000352_230 Hb_009771_090 Hb_009771_090 Hb_014361_120--Hb_009771_090 Hb_014361_120--Hb_011381_120 Hb_000098_040 Hb_000098_040 Hb_014361_120--Hb_000098_040 Hb_001517_060--Hb_009093_020 Hb_001579_050 Hb_001579_050 Hb_001517_060--Hb_001579_050 Hb_000029_390 Hb_000029_390 Hb_001517_060--Hb_000029_390 Hb_001517_060--Hb_000009_470 Hb_011381_120--Hb_009093_020 Hb_002818_130 Hb_002818_130 Hb_011381_120--Hb_002818_130 Hb_000841_040 Hb_000841_040 Hb_011381_120--Hb_000841_040 Hb_000111_460 Hb_000111_460 Hb_011381_120--Hb_000111_460 Hb_001310_020 Hb_001310_020 Hb_011381_120--Hb_001310_020 Hb_003090_050 Hb_003090_050 Hb_011381_120--Hb_003090_050 Hb_000826_010 Hb_000826_010 Hb_002701_250--Hb_000826_010 Hb_000373_160 Hb_000373_160 Hb_002701_250--Hb_000373_160 Hb_020367_040 Hb_020367_040 Hb_002701_250--Hb_020367_040 Hb_002701_250--Hb_000098_040 Hb_000482_180 Hb_000482_180 Hb_002701_250--Hb_000482_180 Hb_009093_020--Hb_000841_040 Hb_001289_050 Hb_001289_050 Hb_009093_020--Hb_001289_050 Hb_000282_100 Hb_000282_100 Hb_009093_020--Hb_000282_100 Hb_009093_020--Hb_003090_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.204662 51.2149 238.709 150.755 0.124898 0.199573
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.298458 0.383637 0.587006 7.95759 949.908

CAGE analysis