Hb_002289_080

Information

Type -
Description -
Location Contig2289: 60703-68263
Sequence    

Annotation

kegg
ID pop:POPTR_0006s04970g
description POPTRDRAFT_560507; 3' exoribonuclease domain 1-containing family protein
nr
ID XP_006373782.1
description hypothetical protein POPTR_0016s05590g [Populus trichocarpa]
swissprot
ID Q96B26
description Exosome complex component RRP43 OS=Homo sapiens GN=EXOSC8 PE=1 SV=1
trembl
ID U5FN09
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0016s05590g PE=4 SV=1
Gene Ontology
ID GO:0005829
description exosome complex component rrp43-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23855: 56547-75649 , PASA_asmbl_23856: 60782-68150
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002289_080 0.0 - - hypothetical protein POPTR_0016s05590g [Populus trichocarpa]
2 Hb_001168_020 0.0634166263 - - PREDICTED: translation initiation factor eIF-2B subunit gamma [Jatropha curcas]
3 Hb_000310_090 0.0673199973 - - 3-oxoacyl-[acyl-carrier-protein] synthase 3 A, chloroplastic [Jatropha curcas]
4 Hb_005144_050 0.072373206 - - PREDICTED: S-adenosylmethionine synthase 1 isoform X2 [Vitis vinifera]
5 Hb_025194_100 0.0736084183 - - PREDICTED: probable 2-oxoglutarate/Fe(II)-dependent dioxygenase [Jatropha curcas]
6 Hb_006478_020 0.0750942772 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
7 Hb_025098_010 0.0763767814 - - PREDICTED: protoheme IX farnesyltransferase, mitochondrial isoform X2 [Jatropha curcas]
8 Hb_001366_180 0.078655042 - - PREDICTED: translocase of chloroplast 33, chloroplastic-like [Jatropha curcas]
9 Hb_009328_020 0.0807092743 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000429_150 0.0810390088 - - hypothetical protein JCGZ_06799 [Jatropha curcas]
11 Hb_000696_330 0.0820145082 - - PREDICTED: uncharacterized protein LOC105647254 [Jatropha curcas]
12 Hb_000172_290 0.0826560841 - - PREDICTED: trafficking protein particle complex subunit 12 [Jatropha curcas]
13 Hb_086085_020 0.0829744202 - - Non-imprinted in Prader-Willi/Angelman syndrome region protein isoform 3 [Theobroma cacao]
14 Hb_000141_080 0.0834856617 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial isoform X1 [Brassica rapa]
15 Hb_006274_030 0.0841709703 - - F-box and wd40 domain protein, putative [Ricinus communis]
16 Hb_022833_100 0.0855995824 - - PREDICTED: phosphatidate cytidylyltransferase 1 [Jatropha curcas]
17 Hb_000140_280 0.0856857241 - - hypothetical protein B456_001G157900 [Gossypium raimondii]
18 Hb_001571_050 0.0876523305 - - PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3-like [Populus euphratica]
19 Hb_054865_150 0.0878080505 - - PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Jatropha curcas]
20 Hb_001024_020 0.088258506 - - hypothetical protein JCGZ_08989 [Jatropha curcas]

Gene co-expression network

sample Hb_002289_080 Hb_002289_080 Hb_001168_020 Hb_001168_020 Hb_002289_080--Hb_001168_020 Hb_000310_090 Hb_000310_090 Hb_002289_080--Hb_000310_090 Hb_005144_050 Hb_005144_050 Hb_002289_080--Hb_005144_050 Hb_025194_100 Hb_025194_100 Hb_002289_080--Hb_025194_100 Hb_006478_020 Hb_006478_020 Hb_002289_080--Hb_006478_020 Hb_025098_010 Hb_025098_010 Hb_002289_080--Hb_025098_010 Hb_001168_020--Hb_000310_090 Hb_000696_330 Hb_000696_330 Hb_001168_020--Hb_000696_330 Hb_000078_120 Hb_000078_120 Hb_001168_020--Hb_000078_120 Hb_003777_320 Hb_003777_320 Hb_001168_020--Hb_003777_320 Hb_000167_080 Hb_000167_080 Hb_001168_020--Hb_000167_080 Hb_001189_070 Hb_001189_070 Hb_000310_090--Hb_001189_070 Hb_000310_090--Hb_025098_010 Hb_086085_020 Hb_086085_020 Hb_000310_090--Hb_086085_020 Hb_001314_050 Hb_001314_050 Hb_000310_090--Hb_001314_050 Hb_001366_180 Hb_001366_180 Hb_005144_050--Hb_001366_180 Hb_005144_050--Hb_025098_010 Hb_185255_010 Hb_185255_010 Hb_005144_050--Hb_185255_010 Hb_000289_110 Hb_000289_110 Hb_005144_050--Hb_000289_110 Hb_024128_020 Hb_024128_020 Hb_005144_050--Hb_024128_020 Hb_152371_010 Hb_152371_010 Hb_025194_100--Hb_152371_010 Hb_000599_300 Hb_000599_300 Hb_025194_100--Hb_000599_300 Hb_025194_100--Hb_000310_090 Hb_002994_030 Hb_002994_030 Hb_025194_100--Hb_002994_030 Hb_025194_100--Hb_000696_330 Hb_000116_270 Hb_000116_270 Hb_006478_020--Hb_000116_270 Hb_000599_250 Hb_000599_250 Hb_006478_020--Hb_000599_250 Hb_003025_100 Hb_003025_100 Hb_006478_020--Hb_003025_100 Hb_000172_290 Hb_000172_290 Hb_006478_020--Hb_000172_290 Hb_001971_010 Hb_001971_010 Hb_006478_020--Hb_001971_010 Hb_006478_020--Hb_001366_180 Hb_025098_010--Hb_185255_010 Hb_001307_030 Hb_001307_030 Hb_025098_010--Hb_001307_030 Hb_008841_020 Hb_008841_020 Hb_025098_010--Hb_008841_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.48723 6.06954 6.35204 18.1599 8.41374 15.3651
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.5144 14.3175 11.4982 11.3932 14.6462

CAGE analysis