Hb_002289_120

Information

Type -
Description -
Location Contig2289: 109222-132185
Sequence    

Annotation

kegg
ID rcu:RCOM_0750130
description hypothetical protein
nr
ID XP_012086148.1
description PREDICTED: uncharacterized protein LOC105645218 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K1B2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21078 PE=4 SV=1
Gene Ontology
ID GO:0005488
description cyclin-related family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23863: 108862-110790 , PASA_asmbl_23864: 109946-110517 , PASA_asmbl_23865: 112147-113060 , PASA_asmbl_23866: 116953-119970 , PASA_asmbl_23867: 120128-120605 , PASA_asmbl_23868: 121051-122759 , PASA_asmbl_23869: 122981-132085 , PASA_asmbl_23870: 126987-127506
cDNA
(Sanger)
(ID:Location)		 022_C20.ab1: 108998-110790 , 025_P15.ab1: 109006-110767 , 034_N04.ab1: 108983-110790

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002289_120 0.0 - - PREDICTED: uncharacterized protein LOC105645218 isoform X2 [Jatropha curcas]
2 Hb_001814_070 0.0707170045 - - PREDICTED: uncharacterized protein LOC105650638 [Jatropha curcas]
3 Hb_000152_420 0.0731699084 - - hypothetical protein B456_001G174200, partial [Gossypium raimondii]
4 Hb_001369_640 0.0744497605 - - PREDICTED: 40S ribosomal protein S20-1 [Jatropha curcas]
5 Hb_128048_010 0.0795274448 - - small nuclear ribonucleoprotein U)1a,U)2b, putative [Ricinus communis]
6 Hb_019249_010 0.0819370055 - - PREDICTED: origin of replication complex subunit 2 [Jatropha curcas]
7 Hb_003878_010 0.0847284821 - - PREDICTED: uncharacterized protein LOC105632145 [Jatropha curcas]
8 Hb_134949_020 0.0849381598 - - PREDICTED: thioredoxin-like protein YLS8 [Cucumis sativus]
9 Hb_000186_190 0.0870653475 - - PREDICTED: uncharacterized protein At4g22160 [Jatropha curcas]
10 Hb_168054_010 0.0879794804 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP18-1 [Elaeis guineensis]
11 Hb_003943_130 0.0880668606 - - PREDICTED: uncharacterized protein LOC105636341 [Jatropha curcas]
12 Hb_033594_110 0.0894311366 - - NADH-ubiquinone oxidoreductase 18 kDa subunit, mitochondrial precursor, putative [Ricinus communis]
13 Hb_001016_030 0.0917251188 - - PREDICTED: uncharacterized protein LOC105636529 isoform X2 [Jatropha curcas]
14 Hb_007875_030 0.0924678745 - - PREDICTED: tubulin-folding cofactor B-like [Jatropha curcas]
15 Hb_078185_010 0.0927829228 - - -
16 Hb_002900_160 0.0932689875 - - PREDICTED: immediate early response 3-interacting protein 1-like [Jatropha curcas]
17 Hb_005667_040 0.0936279749 - - PREDICTED: trafficking protein particle complex subunit 5 [Jatropha curcas]
18 Hb_002811_260 0.0949030073 - - PREDICTED: PITH domain-containing protein At3g04780 [Jatropha curcas]
19 Hb_000792_130 0.0963312224 - - 60S ribosomal L35a-3 -like protein [Gossypium arboreum]
20 Hb_001817_090 0.0964321981 - - PREDICTED: bet1-like SNARE 1-1 [Jatropha curcas]

Gene co-expression network

sample Hb_002289_120 Hb_002289_120 Hb_001814_070 Hb_001814_070 Hb_002289_120--Hb_001814_070 Hb_000152_420 Hb_000152_420 Hb_002289_120--Hb_000152_420 Hb_001369_640 Hb_001369_640 Hb_002289_120--Hb_001369_640 Hb_128048_010 Hb_128048_010 Hb_002289_120--Hb_128048_010 Hb_019249_010 Hb_019249_010 Hb_002289_120--Hb_019249_010 Hb_003878_010 Hb_003878_010 Hb_002289_120--Hb_003878_010 Hb_001814_070--Hb_003878_010 Hb_001814_070--Hb_128048_010 Hb_007875_030 Hb_007875_030 Hb_001814_070--Hb_007875_030 Hb_001016_030 Hb_001016_030 Hb_001814_070--Hb_001016_030 Hb_001814_070--Hb_019249_010 Hb_000152_420--Hb_001369_640 Hb_000792_130 Hb_000792_130 Hb_000152_420--Hb_000792_130 Hb_009793_010 Hb_009793_010 Hb_000152_420--Hb_009793_010 Hb_004157_030 Hb_004157_030 Hb_000152_420--Hb_004157_030 Hb_000172_320 Hb_000172_320 Hb_000152_420--Hb_000172_320 Hb_000690_180 Hb_000690_180 Hb_001369_640--Hb_000690_180 Hb_003943_130 Hb_003943_130 Hb_001369_640--Hb_003943_130 Hb_001314_100 Hb_001314_100 Hb_001369_640--Hb_001314_100 Hb_134949_020 Hb_134949_020 Hb_001369_640--Hb_134949_020 Hb_000926_300 Hb_000926_300 Hb_128048_010--Hb_000926_300 Hb_000000_170 Hb_000000_170 Hb_128048_010--Hb_000000_170 Hb_002811_260 Hb_002811_260 Hb_128048_010--Hb_002811_260 Hb_175215_010 Hb_175215_010 Hb_128048_010--Hb_175215_010 Hb_128048_010--Hb_003878_010 Hb_181288_010 Hb_181288_010 Hb_128048_010--Hb_181288_010 Hb_019249_010--Hb_181288_010 Hb_019249_010--Hb_128048_010 Hb_001817_090 Hb_001817_090 Hb_019249_010--Hb_001817_090 Hb_019249_010--Hb_003878_010 Hb_003878_010--Hb_007875_030 Hb_001454_400 Hb_001454_400 Hb_003878_010--Hb_001454_400 Hb_002105_090 Hb_002105_090 Hb_003878_010--Hb_002105_090 Hb_004800_230 Hb_004800_230 Hb_003878_010--Hb_004800_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.11581 3.9429 6.55985 9.2009 5.96337 11.3664
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.3913 19.35 5.51743 4.13028 2.2268

CAGE analysis