Hb_002289_150

Information

Type -
Description -
Location Contig2289: 149055-156116
Sequence    

Annotation

kegg
ID pop:POPTR_0016s05520g
description POPTRDRAFT_576348; cellulose synthase family protein
nr
ID XP_012086144.1
description PREDICTED: cellulose synthase A catalytic subunit 3 [UDP-forming]-like [Jatropha curcas]
swissprot
ID Q941L0
description Cellulose synthase A catalytic subunit 3 [UDP-forming] OS=Arabidopsis thaliana GN=CESA3 PE=1 SV=2
trembl
ID U5FQH4
description Cellulose synthase OS=Populus trichocarpa GN=POPTR_0016s05520g PE=3 SV=1
Gene Ontology
ID GO:0016020
description cellulose synthase a catalytic subunit 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23872: 149084-154983
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002289_150 0.0 - - PREDICTED: cellulose synthase A catalytic subunit 3 [UDP-forming]-like [Jatropha curcas]
2 Hb_000138_060 0.0669641431 - - PREDICTED: protein trichome birefringence [Jatropha curcas]
3 Hb_001754_060 0.1034394342 - - Xyloglucan 6-xylosyltransferase, putative [Ricinus communis]
4 Hb_000300_230 0.10801239 - - PREDICTED: cation/calcium exchanger 2 [Jatropha curcas]
5 Hb_000797_060 0.1128111415 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
6 Hb_011828_010 0.1152515951 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g67720 [Jatropha curcas]
7 Hb_026740_020 0.1245069172 desease resistance Gene Name: NB-ARC NBS-LRR resistance protein RGH1 [Manihot esculenta]
8 Hb_028639_030 0.1292262353 - - PREDICTED: transmembrane 9 superfamily member 2-like [Jatropha curcas]
9 Hb_005489_150 0.1293201351 - - hypothetical protein JCGZ_20759 [Jatropha curcas]
10 Hb_031089_050 0.1302140007 - - kinase, putative [Ricinus communis]
11 Hb_002217_320 0.1303461709 - - PREDICTED: probable O-acetyltransferase CAS1 isoform X2 [Jatropha curcas]
12 Hb_028077_020 0.1307003006 - - conserved hypothetical protein [Ricinus communis]
13 Hb_006469_070 0.1311457908 - - PREDICTED: F-box/kelch-repeat protein At1g22040 [Jatropha curcas]
14 Hb_003975_010 0.1313419918 - - PREDICTED: protein RTF2 homolog [Jatropha curcas]
15 Hb_020805_120 0.1321759968 - - PREDICTED: glutamate receptor 3.3 [Jatropha curcas]
16 Hb_000473_120 0.1338944699 - - hypothetical protein JCGZ_16177 [Jatropha curcas]
17 Hb_116702_010 0.1347428289 - - Leucine-rich repeat protein kinase family protein [Theobroma cacao]
18 Hb_005192_010 0.1372569633 - - PREDICTED: U-box domain-containing protein 4 [Jatropha curcas]
19 Hb_000109_190 0.1386068283 - - PREDICTED: RING-H2 finger protein ATL47 [Jatropha curcas]
20 Hb_000193_300 0.1398021965 - - PREDICTED: putative glycosyltransferase 5 [Jatropha curcas]

Gene co-expression network

sample Hb_002289_150 Hb_002289_150 Hb_000138_060 Hb_000138_060 Hb_002289_150--Hb_000138_060 Hb_001754_060 Hb_001754_060 Hb_002289_150--Hb_001754_060 Hb_000300_230 Hb_000300_230 Hb_002289_150--Hb_000300_230 Hb_000797_060 Hb_000797_060 Hb_002289_150--Hb_000797_060 Hb_011828_010 Hb_011828_010 Hb_002289_150--Hb_011828_010 Hb_026740_020 Hb_026740_020 Hb_002289_150--Hb_026740_020 Hb_116702_010 Hb_116702_010 Hb_000138_060--Hb_116702_010 Hb_000138_060--Hb_011828_010 Hb_001347_050 Hb_001347_050 Hb_000138_060--Hb_001347_050 Hb_002217_320 Hb_002217_320 Hb_000138_060--Hb_002217_320 Hb_005192_010 Hb_005192_010 Hb_000138_060--Hb_005192_010 Hb_017159_010 Hb_017159_010 Hb_001754_060--Hb_017159_010 Hb_003090_160 Hb_003090_160 Hb_001754_060--Hb_003090_160 Hb_000203_270 Hb_000203_270 Hb_001754_060--Hb_000203_270 Hb_001754_060--Hb_000797_060 Hb_000523_030 Hb_000523_030 Hb_001754_060--Hb_000523_030 Hb_000300_230--Hb_000797_060 Hb_000300_230--Hb_001754_060 Hb_004449_090 Hb_004449_090 Hb_000300_230--Hb_004449_090 Hb_000300_230--Hb_000138_060 Hb_005489_150 Hb_005489_150 Hb_000300_230--Hb_005489_150 Hb_000109_190 Hb_000109_190 Hb_000797_060--Hb_000109_190 Hb_000797_060--Hb_000138_060 Hb_000797_060--Hb_005489_150 Hb_000473_120 Hb_000473_120 Hb_011828_010--Hb_000473_120 Hb_001969_140 Hb_001969_140 Hb_011828_010--Hb_001969_140 Hb_011828_010--Hb_116702_010 Hb_000271_220 Hb_000271_220 Hb_011828_010--Hb_000271_220 Hb_000193_300 Hb_000193_300 Hb_026740_020--Hb_000193_300 Hb_000413_020 Hb_000413_020 Hb_026740_020--Hb_000413_020 Hb_026740_020--Hb_000138_060 Hb_026740_020--Hb_005192_010 Hb_000265_140 Hb_000265_140 Hb_026740_020--Hb_000265_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.69814 8.66221 4.05685 17.8669 2.02329 2.03697
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.16427 1.178 2.29575 3.49331 7.70383

CAGE analysis