Hb_002289_160

Information

Type -
Description -
Location Contig2289: 158828-161604
Sequence    

Annotation

kegg
ID rcu:RCOM_0750280
description Polygalacturonase precursor, putative (EC:3.2.1.67)
nr
ID XP_002529616.1
description Polygalacturonase precursor, putative [Ricinus communis]
swissprot
ID P35336
description Polygalacturonase OS=Actinidia deliciosa PE=2 SV=1
trembl
ID B9SUE7
description Polygalacturonase, putative OS=Ricinus communis GN=RCOM_0750280 PE=3 SV=1
Gene Ontology
ID GO:0004650
description polygalacturonase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002289_160 0.0 - - Polygalacturonase precursor, putative [Ricinus communis]
2 Hb_027136_030 0.0004322667 - - PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
3 Hb_149495_010 0.0009279322 - - putative starch phosphorylase, partial [Sorghum bicolor]
4 Hb_099538_020 0.0057459387 - - hypothetical protein POPTR_0010s12650g [Populus trichocarpa]
5 Hb_010261_070 0.0080398434 - - hypothetical protein B456_009G094800 [Gossypium raimondii]
6 Hb_005914_190 0.0117141411 - - PREDICTED: acid phosphatase 1-like [Populus euphratica]
7 Hb_001922_140 0.0128686116 - - conserved hypothetical protein [Ricinus communis]
8 Hb_003424_040 0.0143060905 - - PREDICTED: putative disease resistance protein RGA1 [Eucalyptus grandis]
9 Hb_157950_010 0.0156000801 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 isoform X1 [Jatropha curcas]
10 Hb_073680_010 0.0157129487 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
11 Hb_005081_050 0.0175656895 transcription factor TF Family: MYB-related PREDICTED: transcription factor WER-like [Prunus mume]
12 Hb_003874_030 0.0188917378 - - hypothetical protein JCGZ_00004 [Jatropha curcas]
13 Hb_049573_010 0.0240009274 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000087_110 0.0243850684 - - conserved hypothetical protein [Ricinus communis]
15 Hb_093541_010 0.0263472218 - - conserved hypothetical protein [Ricinus communis]
16 Hb_101724_010 0.0273910413 - - glutamate receptor family protein [Populus trichocarpa]
17 Hb_178734_010 0.0279920056 - - PREDICTED: uncharacterized protein LOC103331175 [Prunus mume]
18 Hb_002783_290 0.0309656612 - - Uncharacterized protein TCM_034216 [Theobroma cacao]
19 Hb_118730_050 0.0310957126 - - RING/U-box superfamily protein isoform 4 [Theobroma cacao]
20 Hb_006198_160 0.0326501358 - - hypothetical protein POPTR_0002s24290g [Populus trichocarpa]

Gene co-expression network

sample Hb_002289_160 Hb_002289_160 Hb_027136_030 Hb_027136_030 Hb_002289_160--Hb_027136_030 Hb_149495_010 Hb_149495_010 Hb_002289_160--Hb_149495_010 Hb_099538_020 Hb_099538_020 Hb_002289_160--Hb_099538_020 Hb_010261_070 Hb_010261_070 Hb_002289_160--Hb_010261_070 Hb_005914_190 Hb_005914_190 Hb_002289_160--Hb_005914_190 Hb_001922_140 Hb_001922_140 Hb_002289_160--Hb_001922_140 Hb_027136_030--Hb_149495_010 Hb_027136_030--Hb_099538_020 Hb_027136_030--Hb_010261_070 Hb_027136_030--Hb_005914_190 Hb_027136_030--Hb_001922_140 Hb_149495_010--Hb_099538_020 Hb_149495_010--Hb_010261_070 Hb_149495_010--Hb_001922_140 Hb_149495_010--Hb_005914_190 Hb_099538_020--Hb_010261_070 Hb_099538_020--Hb_005914_190 Hb_003874_030 Hb_003874_030 Hb_099538_020--Hb_003874_030 Hb_010261_070--Hb_005914_190 Hb_010261_070--Hb_003874_030 Hb_005914_190--Hb_003874_030 Hb_049573_010 Hb_049573_010 Hb_005914_190--Hb_049573_010 Hb_003424_040 Hb_003424_040 Hb_001922_140--Hb_003424_040 Hb_157950_010 Hb_157950_010 Hb_001922_140--Hb_157950_010 Hb_073680_010 Hb_073680_010 Hb_001922_140--Hb_073680_010 Hb_005081_050 Hb_005081_050 Hb_001922_140--Hb_005081_050 Hb_000087_110 Hb_000087_110 Hb_001922_140--Hb_000087_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0113399 0.12089 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis