Hb_002289_180

Information

Type -
Description -
Location Contig2289: 175718-184694
Sequence    

Annotation

kegg
ID pop:POPTR_0006s05130g
description POPTRDRAFT_560522; hypothetical protein
nr
ID XP_010257201.1
description PREDICTED: probable galactinol--sucrose galactosyltransferase 2 [Nelumbo nucifera]
swissprot
ID Q94A08
description Probable galactinol--sucrose galactosyltransferase 2 OS=Arabidopsis thaliana GN=RFS2 PE=2 SV=2
trembl
ID A0A0D2MB65
description Gossypium raimondii chromosome 2, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_002G147800 PE=4 SV=1
Gene Ontology
ID GO:0003824
description probable galactinol--sucrose galactosyltransferase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23873: 175710-176126
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002289_180 0.0 - - PREDICTED: probable galactinol--sucrose galactosyltransferase 2 [Nelumbo nucifera]
2 Hb_112703_010 0.0555435996 - - PREDICTED: cytochrome P450 CYP72A219-like [Prunus mume]
3 Hb_000997_130 0.0696621251 - - DNA binding protein, putative [Ricinus communis]
4 Hb_032071_010 0.0795682756 - - hypothetical protein EUGRSUZ_J02969 [Eucalyptus grandis]
5 Hb_008651_010 0.0850781508 - - cytochrome P450, putative [Ricinus communis]
6 Hb_099188_010 0.0906192248 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
7 Hb_008637_020 0.0933142907 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000164_160 0.095548922 transcription factor TF Family: GRAS PREDICTED: chitin-inducible gibberellin-responsive protein 1-like isoform X1 [Jatropha curcas]
9 Hb_179363_010 0.0957820278 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
10 Hb_007546_010 0.1029365473 - - unnamed protein product [Vitis vinifera]
11 Hb_164577_010 0.106518824 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
12 Hb_128851_020 0.1121825265 - - ankyrin repeat-containing protein, putative [Ricinus communis]
13 Hb_046610_010 0.115089748 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
14 Hb_010223_010 0.1166209162 - - Flavonol 3-sulfotransferase, putative [Ricinus communis]
15 Hb_003207_230 0.1205602956 transcription factor TF Family: ERF PREDICTED: dehydration-responsive element-binding protein 1B-like [Jatropha curcas]
16 Hb_000819_020 0.1234223763 - - hypothetical protein PRUPE_ppa020290mg, partial [Prunus persica]
17 Hb_004899_010 0.1287967215 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF017 [Jatropha curcas]
18 Hb_002542_030 0.1316075578 transcription factor TF Family: Tify JAZ7 [Hevea brasiliensis]
19 Hb_001511_200 0.1323749567 - - Embryonic abundant protein, putative [Ricinus communis]
20 Hb_002548_030 0.1327904457 - - PREDICTED: uncharacterized protein LOC103343650 [Prunus mume]

Gene co-expression network

sample Hb_002289_180 Hb_002289_180 Hb_112703_010 Hb_112703_010 Hb_002289_180--Hb_112703_010 Hb_000997_130 Hb_000997_130 Hb_002289_180--Hb_000997_130 Hb_032071_010 Hb_032071_010 Hb_002289_180--Hb_032071_010 Hb_008651_010 Hb_008651_010 Hb_002289_180--Hb_008651_010 Hb_099188_010 Hb_099188_010 Hb_002289_180--Hb_099188_010 Hb_008637_020 Hb_008637_020 Hb_002289_180--Hb_008637_020 Hb_179363_010 Hb_179363_010 Hb_112703_010--Hb_179363_010 Hb_112703_010--Hb_008651_010 Hb_112703_010--Hb_032071_010 Hb_112703_010--Hb_000997_130 Hb_000164_160 Hb_000164_160 Hb_112703_010--Hb_000164_160 Hb_046610_010 Hb_046610_010 Hb_000997_130--Hb_046610_010 Hb_164577_010 Hb_164577_010 Hb_000997_130--Hb_164577_010 Hb_007546_010 Hb_007546_010 Hb_000997_130--Hb_007546_010 Hb_000997_130--Hb_000164_160 Hb_010223_010 Hb_010223_010 Hb_000997_130--Hb_010223_010 Hb_032071_010--Hb_008651_010 Hb_032071_010--Hb_179363_010 Hb_001846_030 Hb_001846_030 Hb_032071_010--Hb_001846_030 Hb_032071_010--Hb_000997_130 Hb_008651_010--Hb_179363_010 Hb_008651_010--Hb_010223_010 Hb_000433_050 Hb_000433_050 Hb_008651_010--Hb_000433_050 Hb_002548_030 Hb_002548_030 Hb_099188_010--Hb_002548_030 Hb_128851_020 Hb_128851_020 Hb_099188_010--Hb_128851_020 Hb_000359_230 Hb_000359_230 Hb_099188_010--Hb_000359_230 Hb_110356_010 Hb_110356_010 Hb_099188_010--Hb_110356_010 Hb_001677_140 Hb_001677_140 Hb_099188_010--Hb_001677_140 Hb_034581_010 Hb_034581_010 Hb_099188_010--Hb_034581_010 Hb_008637_020--Hb_128851_020 Hb_008637_020--Hb_099188_010 Hb_008637_020--Hb_164577_010 Hb_002542_030 Hb_002542_030 Hb_008637_020--Hb_002542_030 Hb_001511_200 Hb_001511_200 Hb_008637_020--Hb_001511_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0349605 0.0325799 0.0103689 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis