Hb_002290_060

Information

Type -
Description -
Location Contig2290: 59594-73582
Sequence    

Annotation

kegg
ID rcu:RCOM_1259290
description o-linked n-acetylglucosamine transferase, ogt, putative
nr
ID XP_002530535.1
description o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis]
swissprot
ID O82039
description Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY OS=Petunia hybrida GN=SPY PE=2 SV=1
trembl
ID B9SX16
description O-linked n-acetylglucosamine transferase, ogt, putative OS=Ricinus communis GN=RCOM_1259290 PE=4 SV=1
Gene Ontology
ID GO:0005829
description probable udp-n-acetylglucosamine--peptide n-acetylglucosaminyltransferase spindly

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23890: 59653-73406 , PASA_asmbl_23891: 65920-66142 , PASA_asmbl_23892: 66163-66543 , PASA_asmbl_23893: 62127-62246 , PASA_asmbl_23895: 73422-73535
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002290_060 0.0 - - o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis]
2 Hb_000085_280 0.0769682314 - - PREDICTED: beta-(1,2)-xylosyltransferase [Jatropha curcas]
3 Hb_035524_030 0.095348033 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001477_010 0.1044814185 - - PREDICTED: dnaJ homolog subfamily B member 13-like [Cicer arietinum]
5 Hb_002955_010 0.1047099726 - - PREDICTED: Werner syndrome ATP-dependent helicase homolog [Jatropha curcas]
6 Hb_077219_010 0.1054334877 - - conserved hypothetical protein [Ricinus communis]
7 Hb_024714_030 0.1079732644 - - PREDICTED: sm-like protein LSM4 [Jatropha curcas]
8 Hb_033642_020 0.1084064939 - - hypothetical protein JCGZ_19094 [Jatropha curcas]
9 Hb_019613_020 0.1100660867 - - phospholipase C, putative [Ricinus communis]
10 Hb_003777_220 0.1111741813 transcription factor TF Family: SET PREDICTED: protein SET DOMAIN GROUP 41 isoform X1 [Jatropha curcas]
11 Hb_001252_170 0.1114744116 desease resistance Gene Name: Exostosin hypothetical protein PRUPE_ppa001357mg [Prunus persica]
12 Hb_005288_120 0.1133389528 - - PREDICTED: uncharacterized protein LOC105647751 [Jatropha curcas]
13 Hb_000186_010 0.1154830987 - - PREDICTED: EH domain-containing protein 1 [Jatropha curcas]
14 Hb_010298_010 0.1165325246 - - PREDICTED: uncharacterized protein At2g02148 [Jatropha curcas]
15 Hb_000684_180 0.1172534587 - - PREDICTED: importin subunit alpha-9 isoform X1 [Jatropha curcas]
16 Hb_022288_010 0.1180512325 - - ubiquitin ligase E3 alpha, putative [Ricinus communis]
17 Hb_002681_140 0.1203884931 - - PREDICTED: surfeit locus protein 2 [Jatropha curcas]
18 Hb_013405_130 0.1212760897 - - hypothetical protein CICLE_v10032221mg [Citrus clementina]
19 Hb_000372_040 0.1214230496 - - WD-repeat protein, putative [Ricinus communis]
20 Hb_001846_080 0.1245705184 - - PREDICTED: poly(rC)-binding protein 3-like [Nicotiana sylvestris]

Gene co-expression network

sample Hb_002290_060 Hb_002290_060 Hb_000085_280 Hb_000085_280 Hb_002290_060--Hb_000085_280 Hb_035524_030 Hb_035524_030 Hb_002290_060--Hb_035524_030 Hb_001477_010 Hb_001477_010 Hb_002290_060--Hb_001477_010 Hb_002955_010 Hb_002955_010 Hb_002290_060--Hb_002955_010 Hb_077219_010 Hb_077219_010 Hb_002290_060--Hb_077219_010 Hb_024714_030 Hb_024714_030 Hb_002290_060--Hb_024714_030 Hb_000085_280--Hb_035524_030 Hb_013405_130 Hb_013405_130 Hb_000085_280--Hb_013405_130 Hb_005288_120 Hb_005288_120 Hb_000085_280--Hb_005288_120 Hb_019613_020 Hb_019613_020 Hb_000085_280--Hb_019613_020 Hb_000186_010 Hb_000186_010 Hb_000085_280--Hb_000186_010 Hb_035524_030--Hb_019613_020 Hb_035524_030--Hb_005288_120 Hb_000671_100 Hb_000671_100 Hb_035524_030--Hb_000671_100 Hb_035524_030--Hb_024714_030 Hb_127979_010 Hb_127979_010 Hb_035524_030--Hb_127979_010 Hb_000256_270 Hb_000256_270 Hb_001477_010--Hb_000256_270 Hb_118301_010 Hb_118301_010 Hb_001477_010--Hb_118301_010 Hb_001252_170 Hb_001252_170 Hb_001477_010--Hb_001252_170 Hb_001477_010--Hb_002955_010 Hb_012807_080 Hb_012807_080 Hb_001477_010--Hb_012807_080 Hb_002955_010--Hb_000256_270 Hb_000732_020 Hb_000732_020 Hb_002955_010--Hb_000732_020 Hb_009615_110 Hb_009615_110 Hb_002955_010--Hb_009615_110 Hb_000372_040 Hb_000372_040 Hb_002955_010--Hb_000372_040 Hb_000684_180 Hb_000684_180 Hb_002955_010--Hb_000684_180 Hb_002986_050 Hb_002986_050 Hb_002955_010--Hb_002986_050 Hb_000565_020 Hb_000565_020 Hb_077219_010--Hb_000565_020 Hb_077219_010--Hb_000085_280 Hb_077219_010--Hb_001252_170 Hb_077219_010--Hb_001477_010 Hb_000856_100 Hb_000856_100 Hb_077219_010--Hb_000856_100 Hb_002014_080 Hb_002014_080 Hb_024714_030--Hb_002014_080 Hb_024714_030--Hb_000671_100 Hb_003638_140 Hb_003638_140 Hb_024714_030--Hb_003638_140 Hb_014568_030 Hb_014568_030 Hb_024714_030--Hb_014568_030 Hb_002215_050 Hb_002215_050 Hb_024714_030--Hb_002215_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
117.459 18.9724 13.6688 14.23 136.457 250.749
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
96.7521 34.2708 64.9421 17.2975 13.2583

CAGE analysis