Hb_002291_010

Information

Type -
Description -
Location Contig2291: 5260-8185
Sequence    

Annotation

kegg
ID rcu:RCOM_1579650
description ring finger protein, putative
nr
ID XP_002513558.1
description ring finger protein, putative [Ricinus communis]
swissprot
ID Q9SKK8
description RING-H2 finger protein ATL22 OS=Arabidopsis thaliana GN=ATL22 PE=2 SV=2
trembl
ID B9RII9
description Ring finger protein, putative OS=Ricinus communis GN=RCOM_1579650 PE=4 SV=1
Gene Ontology
ID GO:0008270
description ring-h2 finger protein atl21a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002291_010 0.0 - - ring finger protein, putative [Ricinus communis]
2 Hb_001486_030 0.1465896314 - - conserved hypothetical protein [Ricinus communis]
3 Hb_028811_010 0.1532388072 - - PREDICTED: uncharacterized protein LOC105650178 isoform X1 [Jatropha curcas]
4 Hb_001341_100 0.1583262395 - - hypothetical protein JCGZ_05568 [Jatropha curcas]
5 Hb_003207_010 0.166483868 - - PREDICTED: phospholipase D beta 1-like [Jatropha curcas]
6 Hb_001171_050 0.1687821745 - - PREDICTED: uncharacterized protein DDB_G0284459 [Jatropha curcas]
7 Hb_004064_010 0.1714345221 - - PREDICTED: uncharacterized protein LOC105133340 isoform X1 [Populus euphratica]
8 Hb_029385_010 0.1723552721 - - CTP synthase family protein [Populus trichocarpa]
9 Hb_108329_020 0.1733033074 transcription factor TF Family: EIL ETHYLENE-INSENSITIVE3 protein, putative [Ricinus communis]
10 Hb_024468_010 0.1748611199 - - hypothetical protein CISIN_1g046520mg [Citrus sinensis]
11 Hb_001604_150 0.1812566679 - - PREDICTED: uncharacterized protein At3g15000, mitochondrial-like [Nelumbo nucifera]
12 Hb_001971_060 0.1830094662 - - PREDICTED: 66 kDa stress protein-like [Populus euphratica]
13 Hb_000414_110 0.1845258968 - - PREDICTED: MATE efflux family protein 5 isoform X1 [Populus euphratica]
14 Hb_000001_130 0.1851008772 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
15 Hb_001214_090 0.1862698023 - - PREDICTED: acyl-coenzyme A oxidase 4, peroxisomal [Jatropha curcas]
16 Hb_000011_420 0.1884538026 - - PREDICTED: GDSL esterase/lipase At1g29660-like [Citrus sinensis]
17 Hb_029888_010 0.1904399484 - - PREDICTED: mediator of RNA polymerase II transcription subunit 27 [Nicotiana tomentosiformis]
18 Hb_001623_160 0.1908616245 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At2g33170 [Jatropha curcas]
19 Hb_100147_010 0.1916712108 - - PREDICTED: exosome complex component MTR3 [Jatropha curcas]
20 Hb_003266_100 0.1927633497 - - Isomerase protein [Gossypium arboreum]

Gene co-expression network

sample Hb_002291_010 Hb_002291_010 Hb_001486_030 Hb_001486_030 Hb_002291_010--Hb_001486_030 Hb_028811_010 Hb_028811_010 Hb_002291_010--Hb_028811_010 Hb_001341_100 Hb_001341_100 Hb_002291_010--Hb_001341_100 Hb_003207_010 Hb_003207_010 Hb_002291_010--Hb_003207_010 Hb_001171_050 Hb_001171_050 Hb_002291_010--Hb_001171_050 Hb_004064_010 Hb_004064_010 Hb_002291_010--Hb_004064_010 Hb_001486_030--Hb_028811_010 Hb_001486_030--Hb_001341_100 Hb_001486_030--Hb_004064_010 Hb_109002_020 Hb_109002_020 Hb_001486_030--Hb_109002_020 Hb_119494_010 Hb_119494_010 Hb_001486_030--Hb_119494_010 Hb_003442_070 Hb_003442_070 Hb_001486_030--Hb_003442_070 Hb_001623_160 Hb_001623_160 Hb_028811_010--Hb_001623_160 Hb_001214_090 Hb_001214_090 Hb_028811_010--Hb_001214_090 Hb_000414_110 Hb_000414_110 Hb_028811_010--Hb_000414_110 Hb_011909_010 Hb_011909_010 Hb_028811_010--Hb_011909_010 Hb_028811_010--Hb_004064_010 Hb_004631_210 Hb_004631_210 Hb_001341_100--Hb_004631_210 Hb_004993_060 Hb_004993_060 Hb_001341_100--Hb_004993_060 Hb_001341_100--Hb_003442_070 Hb_001341_100--Hb_004064_010 Hb_000465_300 Hb_000465_300 Hb_001341_100--Hb_000465_300 Hb_094970_010 Hb_094970_010 Hb_003207_010--Hb_094970_010 Hb_001731_030 Hb_001731_030 Hb_003207_010--Hb_001731_030 Hb_005015_110 Hb_005015_110 Hb_003207_010--Hb_005015_110 Hb_000808_170 Hb_000808_170 Hb_003207_010--Hb_000808_170 Hb_001493_150 Hb_001493_150 Hb_003207_010--Hb_001493_150 Hb_000139_340 Hb_000139_340 Hb_003207_010--Hb_000139_340 Hb_000673_020 Hb_000673_020 Hb_001171_050--Hb_000673_020 Hb_000934_190 Hb_000934_190 Hb_001171_050--Hb_000934_190 Hb_015183_060 Hb_015183_060 Hb_001171_050--Hb_015183_060 Hb_005656_100 Hb_005656_100 Hb_001171_050--Hb_005656_100 Hb_002016_080 Hb_002016_080 Hb_001171_050--Hb_002016_080 Hb_013405_140 Hb_013405_140 Hb_001171_050--Hb_013405_140 Hb_003266_100 Hb_003266_100 Hb_004064_010--Hb_003266_100 Hb_105602_010 Hb_105602_010 Hb_004064_010--Hb_105602_010 Hb_000621_020 Hb_000621_020 Hb_004064_010--Hb_000621_020 Hb_004064_010--Hb_109002_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.143286 0.650281 0.493064 0.28822 0.155508 0.091996
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.654731 0.669607 1.30435 1.81033 0.645416

CAGE analysis