Hb_002291_020

Information

Type -
Description -
Location Contig2291: 11339-23532
Sequence    

Annotation

kegg
ID rcu:RCOM_1579610
description glutamate synthase, putative (EC:1.4.1.14)
nr
ID XP_012090081.1
description PREDICTED: glutamate synthase 1 [NADH], chloroplastic isoform X1 [Jatropha curcas]
swissprot
ID Q9LV03
description Glutamate synthase 1 [NADH], chloroplastic OS=Arabidopsis thaliana GN=GLT1 PE=2 SV=2
trembl
ID A0A067JE60
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25982 PE=4 SV=1
Gene Ontology
ID GO:0009570
description glutamate synthase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23897: 11464-23409 , PASA_asmbl_23898: 20327-20428
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002291_020 0.0 - - PREDICTED: glutamate synthase 1 [NADH], chloroplastic isoform X1 [Jatropha curcas]
2 Hb_000649_180 0.1458579496 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 4-like [Jatropha curcas]
3 Hb_007919_040 0.1549033074 - - PREDICTED: protein LYK5 [Jatropha curcas]
4 Hb_000141_010 0.1564001913 - - PREDICTED: uncharacterized protein LOC105632253 [Jatropha curcas]
5 Hb_149515_010 0.1579552009 - - multidrug resistance-associated protein 2, 6 (mrp2, 6), abc-transoprter, putative [Ricinus communis]
6 Hb_012565_040 0.1596289563 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 [Jatropha curcas]
7 Hb_000527_070 0.1651567577 transcription factor TF Family: SNF2 PREDICTED: uncharacterized protein LOC105649495 [Jatropha curcas]
8 Hb_006700_040 0.1708780419 - - PREDICTED: vacuolar-sorting receptor 6-like [Jatropha curcas]
9 Hb_002527_050 0.1757278803 - - hypothetical protein JCGZ_20265 [Jatropha curcas]
10 Hb_004657_060 0.1812629155 - - Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]
11 Hb_000853_060 0.1833217973 - - PREDICTED: myelin transcription factor 1-like isoform X1 [Jatropha curcas]
12 Hb_006594_060 0.1855273633 transcription factor TF Family: HSF PREDICTED: heat shock factor protein HSF24 [Jatropha curcas]
13 Hb_000816_020 0.1857415662 desease resistance Gene Name: NB-ARC unnamed protein product [Coffea canephora]
14 Hb_152868_030 0.1885687517 - - abhydrolase domain containing, putative [Ricinus communis]
15 Hb_000527_140 0.1906419073 transcription factor TF Family: GRAS Chitin-inducible gibberellin-responsive protein, putative [Ricinus communis]
16 Hb_011853_010 0.1957970788 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 [Jatropha curcas]
17 Hb_082683_010 0.2017228778 - - PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris]
18 Hb_000866_110 0.2017988112 - - PREDICTED: uncharacterized protein LOC105642980 isoform X2 [Jatropha curcas]
19 Hb_008145_010 0.2024232949 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
20 Hb_000340_290 0.203207682 - - PREDICTED: piezo-type mechanosensitive ion channel homolog [Jatropha curcas]

Gene co-expression network

sample Hb_002291_020 Hb_002291_020 Hb_000649_180 Hb_000649_180 Hb_002291_020--Hb_000649_180 Hb_007919_040 Hb_007919_040 Hb_002291_020--Hb_007919_040 Hb_000141_010 Hb_000141_010 Hb_002291_020--Hb_000141_010 Hb_149515_010 Hb_149515_010 Hb_002291_020--Hb_149515_010 Hb_012565_040 Hb_012565_040 Hb_002291_020--Hb_012565_040 Hb_000527_070 Hb_000527_070 Hb_002291_020--Hb_000527_070 Hb_002527_050 Hb_002527_050 Hb_000649_180--Hb_002527_050 Hb_000649_180--Hb_149515_010 Hb_008033_060 Hb_008033_060 Hb_000649_180--Hb_008033_060 Hb_000453_130 Hb_000453_130 Hb_000649_180--Hb_000453_130 Hb_001754_260 Hb_001754_260 Hb_000649_180--Hb_001754_260 Hb_003576_050 Hb_003576_050 Hb_007919_040--Hb_003576_050 Hb_000853_060 Hb_000853_060 Hb_007919_040--Hb_000853_060 Hb_003517_020 Hb_003517_020 Hb_007919_040--Hb_003517_020 Hb_000928_040 Hb_000928_040 Hb_007919_040--Hb_000928_040 Hb_000367_310 Hb_000367_310 Hb_007919_040--Hb_000367_310 Hb_000141_010--Hb_000527_070 Hb_002218_070 Hb_002218_070 Hb_000141_010--Hb_002218_070 Hb_001410_010 Hb_001410_010 Hb_000141_010--Hb_001410_010 Hb_082683_010 Hb_082683_010 Hb_000141_010--Hb_082683_010 Hb_001091_020 Hb_001091_020 Hb_000141_010--Hb_001091_020 Hb_008145_010 Hb_008145_010 Hb_149515_010--Hb_008145_010 Hb_011909_010 Hb_011909_010 Hb_149515_010--Hb_011909_010 Hb_149515_010--Hb_007919_040 Hb_149515_010--Hb_000141_010 Hb_012565_040--Hb_002527_050 Hb_002170_020 Hb_002170_020 Hb_012565_040--Hb_002170_020 Hb_004657_060 Hb_004657_060 Hb_012565_040--Hb_004657_060 Hb_000181_210 Hb_000181_210 Hb_012565_040--Hb_000181_210 Hb_000059_300 Hb_000059_300 Hb_012565_040--Hb_000059_300 Hb_000527_140 Hb_000527_140 Hb_000527_070--Hb_000527_140 Hb_114684_010 Hb_114684_010 Hb_000527_070--Hb_114684_010 Hb_000847_020 Hb_000847_020 Hb_000527_070--Hb_000847_020 Hb_000345_340 Hb_000345_340 Hb_000527_070--Hb_000345_340 Hb_073973_020 Hb_073973_020 Hb_000527_070--Hb_073973_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.800532 34.7834 7.55816 16.5291 0.633261 0.467464
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.1703 3.69506 12.6707 44.9658 24.483

CAGE analysis