Hb_002291_030

Information

Type -
Description -
Location Contig2291: 33714-37427
Sequence    

Annotation

kegg
ID fve:101314902
description vesicle transport protein SFT2B-like
nr
ID XP_012090079.1
description PREDICTED: vesicle transport protein SFT2B [Jatropha curcas]
swissprot
ID O95562
description Vesicle transport protein SFT2B OS=Homo sapiens GN=SFT2D2 PE=1 SV=1
trembl
ID A0A067E770
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g031391mg PE=4 SV=1
Gene Ontology
ID GO:0016021
description vesicle transport protein sft2b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23899: 34459-37414
cDNA
(Sanger)
(ID:Location)		 006_M22.ab1: 34668-37410

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002291_030 0.0 - - PREDICTED: vesicle transport protein SFT2B [Jatropha curcas]
2 Hb_002928_110 0.0684719295 - - PREDICTED: uncharacterized protein LOC105635235 [Jatropha curcas]
3 Hb_012522_030 0.0751884548 - - ankyrin repeat-containing protein, putative [Ricinus communis]
4 Hb_002326_030 0.0833883984 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein REM16-like isoform X1 [Jatropha curcas]
5 Hb_001478_050 0.0836725658 - - PREDICTED: uncharacterized protein LOC105640307 [Jatropha curcas]
6 Hb_002387_060 0.0860359197 - - conserved hypothetical protein [Ricinus communis]
7 Hb_092706_020 0.0931650963 - - PREDICTED: uncharacterized protein LOC105637876 isoform X1 [Jatropha curcas]
8 Hb_002282_020 0.0957023995 - - PREDICTED: uncharacterized protein LOC105629828 [Jatropha curcas]
9 Hb_000861_040 0.0969661238 - - PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein 1 [Jatropha curcas]
10 Hb_183963_020 0.0984560989 - - PREDICTED: uncharacterized protein LOC105644615 [Jatropha curcas]
11 Hb_003581_090 0.0993737992 - - PREDICTED: galactose oxidase [Jatropha curcas]
12 Hb_007229_060 0.1042967278 - - PREDICTED: pentatricopeptide repeat-containing protein At2g44880 [Jatropha curcas]
13 Hb_002307_090 0.1061271084 - - magnesium transporter CorA-like family protein [Populus trichocarpa]
14 Hb_000085_300 0.106888861 - - -
15 Hb_005455_070 0.1082359289 - - hypothetical protein POPTR_0001s04440g [Populus trichocarpa]
16 Hb_010589_040 0.1083089054 - - conserved hypothetical protein [Ricinus communis]
17 Hb_012725_110 0.1097871414 - - hypothetical protein JCGZ_09397 [Jatropha curcas]
18 Hb_008695_190 0.1115543937 transcription factor TF Family: ARF PREDICTED: auxin response factor 17 [Jatropha curcas]
19 Hb_015934_020 0.114008547 - - PREDICTED: uncharacterized protein LOC105638669 [Jatropha curcas]
20 Hb_007021_020 0.1140403716 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor VRN1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002291_030 Hb_002291_030 Hb_002928_110 Hb_002928_110 Hb_002291_030--Hb_002928_110 Hb_012522_030 Hb_012522_030 Hb_002291_030--Hb_012522_030 Hb_002326_030 Hb_002326_030 Hb_002291_030--Hb_002326_030 Hb_001478_050 Hb_001478_050 Hb_002291_030--Hb_001478_050 Hb_002387_060 Hb_002387_060 Hb_002291_030--Hb_002387_060 Hb_092706_020 Hb_092706_020 Hb_002291_030--Hb_092706_020 Hb_002928_110--Hb_001478_050 Hb_002928_110--Hb_092706_020 Hb_002928_110--Hb_002326_030 Hb_002928_110--Hb_012522_030 Hb_012725_110 Hb_012725_110 Hb_002928_110--Hb_012725_110 Hb_012522_030--Hb_002387_060 Hb_012522_030--Hb_002326_030 Hb_001711_030 Hb_001711_030 Hb_012522_030--Hb_001711_030 Hb_000419_040 Hb_000419_040 Hb_012522_030--Hb_000419_040 Hb_002282_020 Hb_002282_020 Hb_012522_030--Hb_002282_020 Hb_005455_070 Hb_005455_070 Hb_002326_030--Hb_005455_070 Hb_000861_040 Hb_000861_040 Hb_002326_030--Hb_000861_040 Hb_000173_170 Hb_000173_170 Hb_002326_030--Hb_000173_170 Hb_001473_130 Hb_001473_130 Hb_002326_030--Hb_001473_130 Hb_007229_060 Hb_007229_060 Hb_002326_030--Hb_007229_060 Hb_002835_170 Hb_002835_170 Hb_001478_050--Hb_002835_170 Hb_001478_050--Hb_005455_070 Hb_001478_050--Hb_002326_030 Hb_008695_190 Hb_008695_190 Hb_001478_050--Hb_008695_190 Hb_001478_050--Hb_007229_060 Hb_015934_020 Hb_015934_020 Hb_002387_060--Hb_015934_020 Hb_000085_300 Hb_000085_300 Hb_002387_060--Hb_000085_300 Hb_183963_020 Hb_183963_020 Hb_002387_060--Hb_183963_020 Hb_000032_220 Hb_000032_220 Hb_002387_060--Hb_000032_220 Hb_003581_090 Hb_003581_090 Hb_092706_020--Hb_003581_090 Hb_000521_150 Hb_000521_150 Hb_092706_020--Hb_000521_150 Hb_000085_200 Hb_000085_200 Hb_092706_020--Hb_000085_200 Hb_000926_290 Hb_000926_290 Hb_092706_020--Hb_000926_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
58.5539 4.06345 4.54349 6.8303 26.927 30.2331
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
64.6814 68.7589 73.5727 7.68462 1.97918

CAGE analysis