Hb_002291_070

Information

Type -
Description -
Location Contig2291: 57459-66675
Sequence    

Annotation

kegg
ID pmum:103333766
description dentin sialophosphoprotein
nr
ID XP_008234880.1
description PREDICTED: dentin sialophosphoprotein [Prunus mume]
swissprot
ID F1QBY1
description Nipped-B-like protein B OS=Danio rerio GN=nipblb PE=2 SV=1
trembl
ID B9IDT0
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s01720g PE=4 SV=2
Gene Ontology
ID GO:0008152
description dentin sialophosphoprotein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23903: 57534-66595
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002291_070 0.0 - - PREDICTED: dentin sialophosphoprotein [Prunus mume]
2 Hb_002471_210 0.0486528135 - - PREDICTED: THO complex subunit 2 [Jatropha curcas]
3 Hb_007849_020 0.0605832442 transcription factor TF Family: MYB cell division control protein, putative [Ricinus communis]
4 Hb_000780_220 0.0610565089 transcription factor TF Family: GRAS PREDICTED: scarecrow-like transcription factor PAT1 [Jatropha curcas]
5 Hb_000475_020 0.0648469546 - - PREDICTED: dehydrogenase/reductase SDR family member on chromosome X homolog isoform X2 [Jatropha curcas]
6 Hb_000250_070 0.0661363328 - - PREDICTED: E3 ubiquitin-protein ligase listerin [Jatropha curcas]
7 Hb_001322_210 0.0698878006 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6-like [Jatropha curcas]
8 Hb_000096_180 0.0708336651 - - PREDICTED: pentatricopeptide repeat-containing protein At5g67570, chloroplastic-like isoform X1 [Jatropha curcas]
9 Hb_000832_300 0.0749872472 - - -
10 Hb_000714_050 0.0806995666 - - PREDICTED: pentatricopeptide repeat-containing protein At2g16880-like [Jatropha curcas]
11 Hb_002043_170 0.0811682123 - - PREDICTED: dentin sialophosphoprotein [Jatropha curcas]
12 Hb_001811_120 0.0815050625 - - PREDICTED: KH domain-containing protein At4g18375 isoform X1 [Jatropha curcas]
13 Hb_017075_010 0.0816982416 transcription factor TF Family: SNF2 PREDICTED: putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1 [Jatropha curcas]
14 Hb_010315_090 0.082121274 - - suppressor of ty, putative [Ricinus communis]
15 Hb_002524_040 0.0847405228 - - PREDICTED: FIP1[V]-like protein [Jatropha curcas]
16 Hb_003623_030 0.0851711594 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 14 [Jatropha curcas]
17 Hb_000997_030 0.0861993639 - - PREDICTED: MATH domain-containing protein At5g43560-like [Jatropha curcas]
18 Hb_002217_150 0.0869140228 - - PREDICTED: nuclear export mediator factor Nemf [Jatropha curcas]
19 Hb_000227_380 0.0876867118 - - PREDICTED: protein TIME FOR COFFEE isoform X3 [Jatropha curcas]
20 Hb_147737_010 0.0883142259 - - PREDICTED: arginine/serine-rich coiled-coil protein 2 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_002291_070 Hb_002291_070 Hb_002471_210 Hb_002471_210 Hb_002291_070--Hb_002471_210 Hb_007849_020 Hb_007849_020 Hb_002291_070--Hb_007849_020 Hb_000780_220 Hb_000780_220 Hb_002291_070--Hb_000780_220 Hb_000475_020 Hb_000475_020 Hb_002291_070--Hb_000475_020 Hb_000250_070 Hb_000250_070 Hb_002291_070--Hb_000250_070 Hb_001322_210 Hb_001322_210 Hb_002291_070--Hb_001322_210 Hb_002471_210--Hb_007849_020 Hb_002471_210--Hb_000475_020 Hb_001811_120 Hb_001811_120 Hb_002471_210--Hb_001811_120 Hb_002471_210--Hb_000250_070 Hb_002471_210--Hb_001322_210 Hb_006816_300 Hb_006816_300 Hb_007849_020--Hb_006816_300 Hb_007849_020--Hb_000250_070 Hb_000227_380 Hb_000227_380 Hb_007849_020--Hb_000227_380 Hb_002105_080 Hb_002105_080 Hb_007849_020--Hb_002105_080 Hb_000780_220--Hb_001322_210 Hb_000780_220--Hb_002471_210 Hb_000743_040 Hb_000743_040 Hb_000780_220--Hb_000743_040 Hb_000780_220--Hb_007849_020 Hb_000046_450 Hb_000046_450 Hb_000780_220--Hb_000046_450 Hb_000475_020--Hb_001811_120 Hb_000475_020--Hb_000250_070 Hb_000475_020--Hb_007849_020 Hb_147737_010 Hb_147737_010 Hb_000475_020--Hb_147737_010 Hb_000250_070--Hb_006816_300 Hb_000250_070--Hb_001811_120 Hb_003216_080 Hb_003216_080 Hb_001322_210--Hb_003216_080 Hb_000347_130 Hb_000347_130 Hb_001322_210--Hb_000347_130 Hb_001322_210--Hb_007849_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
30.4314 21.094 5.87934 7.50929 31.6577 38.5252
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.5504 7.23031 13.7304 16.399 17.7729

CAGE analysis