Hb_002292_010

Information

Type -
Description -
Location Contig2292: 3900-6547
Sequence    

Annotation

kegg
ID cic:CICLE_v10029628mg
description hypothetical protein
nr
ID XP_006424353.1
description hypothetical protein CICLE_v10029628mg [Citrus clementina]
swissprot
ID -
description -
trembl
ID V4RSM0
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029628mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23905: 3955-6592
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002292_010 0.0 - - hypothetical protein CICLE_v10029628mg [Citrus clementina]
2 Hb_007007_050 0.0448973324 - - PREDICTED: ubiquitin-related modifier 1 homolog 2 [Malus domestica]
3 Hb_004363_010 0.0757325457 - - hypothetical protein CISIN_1g0405721mg, partial [Citrus sinensis]
4 Hb_141532_010 0.0820623324 - - PREDICTED: protein SMG9-like [Jatropha curcas]
5 Hb_001135_020 0.0831858499 - - PREDICTED: macrophage erythroblast attacher [Jatropha curcas]
6 Hb_002639_150 0.0860079502 - - -
7 Hb_003687_230 0.0864020869 - - PREDICTED: actin-depolymerizing factor-like [Jatropha curcas]
8 Hb_000359_330 0.0880640643 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001427_050 0.0886115237 - - PREDICTED: probable protein arginine N-methyltransferase 1.2 [Jatropha curcas]
10 Hb_010968_010 0.0893493721 - - Golgi snare 12 isoform 1 [Theobroma cacao]
11 Hb_002026_140 0.0899742529 - - hypothetical protein POPTR_0006s13340g [Populus trichocarpa]
12 Hb_019962_030 0.093302501 - - PREDICTED: uncharacterized protein LOC105650622 [Jatropha curcas]
13 Hb_000808_250 0.0937153141 - - PREDICTED: uncharacterized protein LOC105647419 [Jatropha curcas]
14 Hb_002687_140 0.0956460765 - - hypothetical protein JCGZ_24463 [Jatropha curcas]
15 Hb_106552_050 0.098099944 - - PREDICTED: uncharacterized protein LOC105642134 [Jatropha curcas]
16 Hb_007164_020 0.0991069285 - - hypothetical protein glysoja_025872 [Glycine soja]
17 Hb_002192_080 0.0998643194 - - hypothetical protein B456_013G069200 [Gossypium raimondii]
18 Hb_002784_050 0.1006271621 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Jatropha curcas]
19 Hb_003142_070 0.1016498205 - - hypothetical protein F383_14657 [Gossypium arboreum]
20 Hb_000926_310 0.1018570922 - - uncharacterized protein LOC100500241 [Glycine max]

Gene co-expression network

sample Hb_002292_010 Hb_002292_010 Hb_007007_050 Hb_007007_050 Hb_002292_010--Hb_007007_050 Hb_004363_010 Hb_004363_010 Hb_002292_010--Hb_004363_010 Hb_141532_010 Hb_141532_010 Hb_002292_010--Hb_141532_010 Hb_001135_020 Hb_001135_020 Hb_002292_010--Hb_001135_020 Hb_002639_150 Hb_002639_150 Hb_002292_010--Hb_002639_150 Hb_003687_230 Hb_003687_230 Hb_002292_010--Hb_003687_230 Hb_019962_030 Hb_019962_030 Hb_007007_050--Hb_019962_030 Hb_002687_140 Hb_002687_140 Hb_007007_050--Hb_002687_140 Hb_000808_250 Hb_000808_250 Hb_007007_050--Hb_000808_250 Hb_002784_050 Hb_002784_050 Hb_007007_050--Hb_002784_050 Hb_000359_330 Hb_000359_330 Hb_007007_050--Hb_000359_330 Hb_000976_260 Hb_000976_260 Hb_004363_010--Hb_000976_260 Hb_003050_200 Hb_003050_200 Hb_004363_010--Hb_003050_200 Hb_008112_040 Hb_008112_040 Hb_004363_010--Hb_008112_040 Hb_007441_210 Hb_007441_210 Hb_004363_010--Hb_007441_210 Hb_004363_010--Hb_007007_050 Hb_000175_090 Hb_000175_090 Hb_141532_010--Hb_000175_090 Hb_001142_050 Hb_001142_050 Hb_141532_010--Hb_001142_050 Hb_141532_010--Hb_004363_010 Hb_005565_040 Hb_005565_040 Hb_141532_010--Hb_005565_040 Hb_141532_010--Hb_007007_050 Hb_001288_080 Hb_001288_080 Hb_001135_020--Hb_001288_080 Hb_001135_020--Hb_007007_050 Hb_001828_200 Hb_001828_200 Hb_001135_020--Hb_001828_200 Hb_004324_340 Hb_004324_340 Hb_001135_020--Hb_004324_340 Hb_001135_020--Hb_141532_010 Hb_000661_140 Hb_000661_140 Hb_002639_150--Hb_000661_140 Hb_000926_310 Hb_000926_310 Hb_002639_150--Hb_000926_310 Hb_005288_150 Hb_005288_150 Hb_002639_150--Hb_005288_150 Hb_058972_010 Hb_058972_010 Hb_002639_150--Hb_058972_010 Hb_002639_150--Hb_003687_230 Hb_020367_050 Hb_020367_050 Hb_002639_150--Hb_020367_050 Hb_000610_010 Hb_000610_010 Hb_003687_230--Hb_000610_010 Hb_003292_040 Hb_003292_040 Hb_003687_230--Hb_003292_040 Hb_000009_530 Hb_000009_530 Hb_003687_230--Hb_000009_530 Hb_003687_230--Hb_000926_310 Hb_001329_130 Hb_001329_130 Hb_003687_230--Hb_001329_130 Hb_003078_040 Hb_003078_040 Hb_003687_230--Hb_003078_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
98.1215 47.7952 57.2177 30.7205 79.8165 61.0216
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
52.7523 71.5537 27.2368 16.0609 11.1611

CAGE analysis