Hb_002292_080

Information

Type -
Description -
Location Contig2292: 73979-79241
Sequence    

Annotation

kegg
ID rcu:RCOM_1186280
description transferase, transferring glycosyl groups, putative (EC:2.4.1.12)
nr
ID XP_002527445.1
description transferase, transferring glycosyl groups, putative [Ricinus communis]
swissprot
ID Q9FNI7
description Glucomannan 4-beta-mannosyltransferase 2 OS=Arabidopsis thaliana GN=CSLA2 PE=2 SV=1
trembl
ID B9SN76
description Transferase, transferring glycosyl groups, putative OS=Ricinus communis GN=RCOM_1186280 PE=4 SV=1
Gene Ontology
ID GO:0016760
description glucomannan 4-beta-mannosyltransferase 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002292_080 0.0 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
2 Hb_012518_080 0.0815740605 - - PREDICTED: glucan endo-1,3-beta-glucosidase 11-like [Jatropha curcas]
3 Hb_001348_010 0.0861271186 - - PREDICTED: lysM domain-containing GPI-anchored protein 1 [Jatropha curcas]
4 Hb_000093_090 0.0896694898 - - PREDICTED: UDP-arabinopyranose mutase 3 [Populus euphratica]
5 Hb_000735_020 0.0929160679 - - Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]
6 Hb_000162_190 0.0989310508 - - PREDICTED: thaumatin-like protein 1b [Jatropha curcas]
7 Hb_003935_040 0.1009879063 transcription factor TF Family: MIKC PREDICTED: MADS-box protein SVP [Jatropha curcas]
8 Hb_001085_190 0.1095735209 transcription factor TF Family: ERF AP2 domain-containing transcription factor family protein [Populus trichocarpa]
9 Hb_003728_110 0.1114239608 - - PREDICTED: calmodulin-like protein 3 [Populus euphratica]
10 Hb_000984_130 0.1134028055 - - tubulin [Ornithogalum longebracteatum]
11 Hb_000310_110 0.1163104619 - - PREDICTED: probable trehalose-phosphate phosphatase F isoform X1 [Jatropha curcas]
12 Hb_025787_020 0.1223751005 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 1 [Jatropha curcas]
13 Hb_005253_020 0.1224611294 - - PREDICTED: uncharacterized protein LOC105629998 [Jatropha curcas]
14 Hb_012395_050 0.1225103147 - - PREDICTED: uncharacterized protein LOC105632180 [Jatropha curcas]
15 Hb_000003_110 0.124648698 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
16 Hb_015934_080 0.1258591498 - - PREDICTED: glucan endo-1,3-beta-glucosidase 12 [Jatropha curcas]
17 Hb_033312_070 0.1330948091 - - hypothetical protein POPTR_0017s02960g [Populus trichocarpa]
18 Hb_004055_090 0.1333606853 - - PREDICTED: protein IQ-DOMAIN 1 [Jatropha curcas]
19 Hb_000020_050 0.137495649 - - PREDICTED: expansin-A6 [Jatropha curcas]
20 Hb_000017_250 0.1385577799 - - PREDICTED: E3 ubiquitin-protein ligase RHA1B-like [Jatropha curcas]

Gene co-expression network

sample Hb_002292_080 Hb_002292_080 Hb_012518_080 Hb_012518_080 Hb_002292_080--Hb_012518_080 Hb_001348_010 Hb_001348_010 Hb_002292_080--Hb_001348_010 Hb_000093_090 Hb_000093_090 Hb_002292_080--Hb_000093_090 Hb_000735_020 Hb_000735_020 Hb_002292_080--Hb_000735_020 Hb_000162_190 Hb_000162_190 Hb_002292_080--Hb_000162_190 Hb_003935_040 Hb_003935_040 Hb_002292_080--Hb_003935_040 Hb_012518_080--Hb_000735_020 Hb_001085_190 Hb_001085_190 Hb_012518_080--Hb_001085_190 Hb_000303_060 Hb_000303_060 Hb_012518_080--Hb_000303_060 Hb_033312_070 Hb_033312_070 Hb_012518_080--Hb_033312_070 Hb_011918_070 Hb_011918_070 Hb_012518_080--Hb_011918_070 Hb_000310_110 Hb_000310_110 Hb_001348_010--Hb_000310_110 Hb_000997_240 Hb_000997_240 Hb_001348_010--Hb_000997_240 Hb_012395_050 Hb_012395_050 Hb_001348_010--Hb_012395_050 Hb_001138_070 Hb_001138_070 Hb_001348_010--Hb_001138_070 Hb_001348_010--Hb_001085_190 Hb_000093_090--Hb_000162_190 Hb_000853_250 Hb_000853_250 Hb_000093_090--Hb_000853_250 Hb_000093_090--Hb_003935_040 Hb_001141_440 Hb_001141_440 Hb_000093_090--Hb_001141_440 Hb_030685_010 Hb_030685_010 Hb_000093_090--Hb_030685_010 Hb_000735_020--Hb_001085_190 Hb_000735_020--Hb_011918_070 Hb_000735_020--Hb_033312_070 Hb_006788_110 Hb_006788_110 Hb_000735_020--Hb_006788_110 Hb_000162_190--Hb_003935_040 Hb_025787_020 Hb_025787_020 Hb_000162_190--Hb_025787_020 Hb_009252_080 Hb_009252_080 Hb_000162_190--Hb_009252_080 Hb_000162_190--Hb_001141_440 Hb_043552_010 Hb_043552_010 Hb_000162_190--Hb_043552_010 Hb_000162_190--Hb_000310_110 Hb_000345_230 Hb_000345_230 Hb_003935_040--Hb_000345_230 Hb_003935_040--Hb_000310_110 Hb_000020_050 Hb_000020_050 Hb_003935_040--Hb_000020_050 Hb_015934_080 Hb_015934_080 Hb_003935_040--Hb_015934_080 Hb_009189_100 Hb_009189_100 Hb_003935_040--Hb_009189_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.550376 1.88269 15.8702 30.8099 0.0754302 0.202074
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.335846 0.166909 0.742439 6.63355 6.71128

CAGE analysis