Hb_002293_030

Information

Type -
Description -
Location Contig2293: 60982-64625
Sequence    

Annotation

kegg
ID cic:CICLE_v10032956mg
description hypothetical protein
nr
ID AAQ08196.1
description eukaryotic translation initiation factor 5A isoform VI [Hevea brasiliensis]
swissprot
ID Q9AXJ4
description Eukaryotic translation initiation factor 5A OS=Manihot esculenta PE=2 SV=2
trembl
ID Q71F46
description Eukaryotic translation initiation factor 5A OS=Hevea brasiliensis GN=eIF-5A PE=2 SV=1
Gene Ontology
ID GO:0003743
description eukaryotic translation initiation factor 5a-2-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002293_030 0.0 - - eukaryotic translation initiation factor 5A isoform VI [Hevea brasiliensis]
2 Hb_011310_060 0.0816690589 - - PREDICTED: uncharacterized protein At2g34160-like [Jatropha curcas]
3 Hb_017711_010 0.0855164442 - - PREDICTED: mitochondrial import receptor subunit TOM9-2 [Jatropha curcas]
4 Hb_008847_020 0.0971482613 - - 40S ribosomal protein S17C [Hevea brasiliensis]
5 Hb_002234_210 0.1036124597 - - hypothetical protein POPTR_0012s13380g [Populus trichocarpa]
6 Hb_000526_150 0.1038489405 - - hypothetical protein POPTR_0019s10790g, partial [Populus trichocarpa]
7 Hb_000634_050 0.1038648675 - - PREDICTED: uncharacterized protein LOC105636623 [Jatropha curcas]
8 Hb_000134_020 0.1054639417 - - thioredoxin-like family protein [Hevea brasiliensis]
9 Hb_003058_070 0.1073350624 - - PREDICTED: uncharacterized protein LOC105628964 [Jatropha curcas]
10 Hb_005224_050 0.108282344 - - PREDICTED: uncharacterized protein LOC105632350 [Jatropha curcas]
11 Hb_002781_020 0.1091696295 - - PREDICTED: uncharacterized protein LOC105644398 isoform X2 [Jatropha curcas]
12 Hb_000563_590 0.1101769875 - - PREDICTED: 60S ribosomal protein L22-2-like [Jatropha curcas]
13 Hb_171900_050 0.1102136425 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001104_120 0.1108176225 - - -
15 Hb_000190_060 0.1133323887 - - PREDICTED: uncharacterized protein LOC105644688 isoform X1 [Jatropha curcas]
16 Hb_004005_010 0.1137141637 - - PREDICTED: uncharacterized protein LOC102623333 isoform X2 [Citrus sinensis]
17 Hb_004958_050 0.1164249418 - - hypothetical protein CICLE_v10032980mg [Citrus clementina]
18 Hb_010810_020 0.1171091361 - - PREDICTED: uncharacterized protein LOC105638766 [Jatropha curcas]
19 Hb_003638_080 0.1175870113 - - hypothetical protein POPTR_0006s13340g [Populus trichocarpa]
20 Hb_000417_110 0.1181441915 - - PREDICTED: uncharacterized protein LOC105649681 [Jatropha curcas]

Gene co-expression network

sample Hb_002293_030 Hb_002293_030 Hb_011310_060 Hb_011310_060 Hb_002293_030--Hb_011310_060 Hb_017711_010 Hb_017711_010 Hb_002293_030--Hb_017711_010 Hb_008847_020 Hb_008847_020 Hb_002293_030--Hb_008847_020 Hb_002234_210 Hb_002234_210 Hb_002293_030--Hb_002234_210 Hb_000526_150 Hb_000526_150 Hb_002293_030--Hb_000526_150 Hb_000634_050 Hb_000634_050 Hb_002293_030--Hb_000634_050 Hb_000134_020 Hb_000134_020 Hb_011310_060--Hb_000134_020 Hb_011310_060--Hb_002234_210 Hb_171900_050 Hb_171900_050 Hb_011310_060--Hb_171900_050 Hb_009252_130 Hb_009252_130 Hb_011310_060--Hb_009252_130 Hb_000190_060 Hb_000190_060 Hb_011310_060--Hb_000190_060 Hb_005224_050 Hb_005224_050 Hb_017711_010--Hb_005224_050 Hb_000193_350 Hb_000193_350 Hb_017711_010--Hb_000193_350 Hb_000175_400 Hb_000175_400 Hb_017711_010--Hb_000175_400 Hb_003058_220 Hb_003058_220 Hb_017711_010--Hb_003058_220 Hb_000009_040 Hb_000009_040 Hb_017711_010--Hb_000009_040 Hb_002781_020 Hb_002781_020 Hb_008847_020--Hb_002781_020 Hb_010883_150 Hb_010883_150 Hb_008847_020--Hb_010883_150 Hb_000199_070 Hb_000199_070 Hb_008847_020--Hb_000199_070 Hb_000184_050 Hb_000184_050 Hb_008847_020--Hb_000184_050 Hb_000212_470 Hb_000212_470 Hb_008847_020--Hb_000212_470 Hb_008847_020--Hb_000526_150 Hb_004958_050 Hb_004958_050 Hb_002234_210--Hb_004958_050 Hb_002234_210--Hb_000634_050 Hb_003058_070 Hb_003058_070 Hb_002234_210--Hb_003058_070 Hb_000417_110 Hb_000417_110 Hb_002234_210--Hb_000417_110 Hb_002234_210--Hb_000190_060 Hb_002234_210--Hb_009252_130 Hb_001269_270 Hb_001269_270 Hb_000526_150--Hb_001269_270 Hb_001638_260 Hb_001638_260 Hb_000526_150--Hb_001638_260 Hb_009851_100 Hb_009851_100 Hb_000526_150--Hb_009851_100 Hb_000545_150 Hb_000545_150 Hb_000526_150--Hb_000545_150 Hb_000526_150--Hb_000634_050 Hb_001818_020 Hb_001818_020 Hb_000526_150--Hb_001818_020 Hb_000634_050--Hb_000417_110 Hb_000045_190 Hb_000045_190 Hb_000634_050--Hb_000045_190 Hb_001584_070 Hb_001584_070 Hb_000634_050--Hb_001584_070 Hb_000634_050--Hb_002781_020 Hb_000798_030 Hb_000798_030 Hb_000634_050--Hb_000798_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
140.697 32.8061 22.2794 54.3119 170.39 241.81
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
329.251 552.534 107.306 58.1318 14.0617

CAGE analysis