Hb_002294_020

Information

Type -
Description -
Location Contig2294: 45013-46281
Sequence    

Annotation

kegg
ID cit:102610398
description putative ribonuclease H protein At1g65750-like
nr
ID XP_012066908.1
description PREDICTED: uncharacterized protein LOC105629874 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID S8BT41
description Uncharacterized protein OS=Genlisea aurea GN=M569_17254 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002294_020 0.0 - - PREDICTED: uncharacterized protein LOC105629874 [Jatropha curcas]
2 Hb_000043_060 0.0559703683 - - PREDICTED: probable pectinesterase/pectinesterase inhibitor 35 [Jatropha curcas]
3 Hb_001081_070 0.0682691333 - - hypothetical protein POPTR_0001s08730g [Populus trichocarpa]
4 Hb_004113_030 0.0694398822 - - -
5 Hb_000758_060 0.0845491083 - - PREDICTED: GDSL esterase/lipase At5g45960 [Jatropha curcas]
6 Hb_001681_010 0.0849348703 - - PREDICTED: cytochrome P450 81E8-like isoform X1 [Populus euphratica]
7 Hb_184398_010 0.085084519 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
8 Hb_004466_080 0.0867023552 - - PREDICTED: SNF1-related protein kinase regulatory subunit gamma-1-like [Jatropha curcas]
9 Hb_004197_030 0.0883011777 - - hypothetical protein JCGZ_16263 [Jatropha curcas]
10 Hb_000015_220 0.0903443085 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os03g0620400-like [Jatropha curcas]
11 Hb_025654_010 0.0905256665 - - PREDICTED: uncharacterized protein LOC104221396 [Nicotiana sylvestris]
12 Hb_011540_050 0.0910606355 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
13 Hb_187301_010 0.0911673129 - - PREDICTED: uncharacterized protein LOC105629082 [Jatropha curcas]
14 Hb_000088_280 0.0924827236 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Jatropha curcas]
15 Hb_003370_040 0.0942934418 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]
16 Hb_048694_010 0.0947599178 - - catalytic, putative [Ricinus communis]
17 Hb_001192_020 0.0950444487 - - -
18 Hb_020956_050 0.1005149634 - - PREDICTED: uncharacterized protein LOC102670328 [Glycine max]
19 Hb_000010_230 0.1011397685 - - PREDICTED: F-box/WD repeat-containing protein 11-like [Jatropha curcas]
20 Hb_006331_010 0.1015376918 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1, partial [Populus euphratica]

Gene co-expression network

sample Hb_002294_020 Hb_002294_020 Hb_000043_060 Hb_000043_060 Hb_002294_020--Hb_000043_060 Hb_001081_070 Hb_001081_070 Hb_002294_020--Hb_001081_070 Hb_004113_030 Hb_004113_030 Hb_002294_020--Hb_004113_030 Hb_000758_060 Hb_000758_060 Hb_002294_020--Hb_000758_060 Hb_001681_010 Hb_001681_010 Hb_002294_020--Hb_001681_010 Hb_184398_010 Hb_184398_010 Hb_002294_020--Hb_184398_010 Hb_000043_060--Hb_000758_060 Hb_000015_220 Hb_000015_220 Hb_000043_060--Hb_000015_220 Hb_004197_030 Hb_004197_030 Hb_000043_060--Hb_004197_030 Hb_094074_010 Hb_094074_010 Hb_000043_060--Hb_094074_010 Hb_000043_060--Hb_004113_030 Hb_004138_020 Hb_004138_020 Hb_001081_070--Hb_004138_020 Hb_006331_010 Hb_006331_010 Hb_001081_070--Hb_006331_010 Hb_083242_040 Hb_083242_040 Hb_001081_070--Hb_083242_040 Hb_003477_020 Hb_003477_020 Hb_001081_070--Hb_003477_020 Hb_009095_020 Hb_009095_020 Hb_001081_070--Hb_009095_020 Hb_004113_030--Hb_001681_010 Hb_004466_080 Hb_004466_080 Hb_004113_030--Hb_004466_080 Hb_004113_030--Hb_184398_010 Hb_025654_010 Hb_025654_010 Hb_004113_030--Hb_025654_010 Hb_000758_060--Hb_004466_080 Hb_000758_060--Hb_025654_010 Hb_011540_050 Hb_011540_050 Hb_000758_060--Hb_011540_050 Hb_187301_010 Hb_187301_010 Hb_000758_060--Hb_187301_010 Hb_001681_010--Hb_184398_010 Hb_001681_010--Hb_004466_080 Hb_001681_010--Hb_025654_010 Hb_001681_010--Hb_011540_050 Hb_001681_010--Hb_187301_010 Hb_000088_280 Hb_000088_280 Hb_001681_010--Hb_000088_280 Hb_184398_010--Hb_004466_080 Hb_184398_010--Hb_025654_010 Hb_184398_010--Hb_011540_050 Hb_184398_010--Hb_187301_010 Hb_184398_010--Hb_000088_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0152213 0.142358 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.903238

CAGE analysis