Hb_002296_040

Information

Type -
Description -
Location Contig2296: 45522-56154
Sequence    

Annotation

kegg
ID pop:POPTR_0007s06660g
description hypothetical protein
nr
ID XP_012089384.1
description PREDICTED: DNA-directed RNA polymerase II subunit 4 [Jatropha curcas]
swissprot
ID O48890
description DNA-directed RNA polymerase II subunit 4 OS=Arabidopsis thaliana GN=NRPB4 PE=1 SV=1
trembl
ID B9H5K4
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s08690g PE=4 SV=1
Gene Ontology
ID GO:0000166
description dna-directed rna polymerase ii subunit 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23908: 48004-56207
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002296_040 0.0 - - PREDICTED: DNA-directed RNA polymerase II subunit 4 [Jatropha curcas]
2 Hb_002596_040 0.0705883881 - - PREDICTED: uncharacterized protein LOC105645264 isoform X2 [Jatropha curcas]
3 Hb_002662_030 0.0770969077 - - PREDICTED: mannose-P-dolichol utilization defect 1 protein homolog 2 [Jatropha curcas]
4 Hb_002260_150 0.0784849048 - - PREDICTED: uncharacterized protein LOC105647187 isoform X2 [Jatropha curcas]
5 Hb_000326_090 0.078887193 - - PREDICTED: glycine-rich RNA-binding protein GRP1A-like [Nelumbo nucifera]
6 Hb_000707_030 0.0792403495 - - PREDICTED: probable proteasome inhibitor [Vitis vinifera]
7 Hb_007735_030 0.0805915103 - - Calcium-binding EF-hand family protein isoform 1 [Theobroma cacao]
8 Hb_031089_040 0.0829169129 - - thioredoxin H-type 1 [Hevea brasiliensis]
9 Hb_000656_170 0.0829921851 - - lsm1, putative [Ricinus communis]
10 Hb_010423_040 0.0840481328 - - hypothetical protein JCGZ_17463 [Jatropha curcas]
11 Hb_010180_010 0.0855024418 - - PREDICTED: uncharacterized protein LOC105631104 [Jatropha curcas]
12 Hb_000003_730 0.0905348176 - - DNA repair/transcription protein met18/mms19, putative [Ricinus communis]
13 Hb_005400_030 0.0906896001 - - PREDICTED: LYR motif-containing protein At3g19508 [Jatropha curcas]
14 Hb_004032_100 0.093894272 - - PREDICTED: regulator of nonsense transcripts UPF3-like [Jatropha curcas]
15 Hb_005615_080 0.0938958276 - - PREDICTED: uncharacterized protein LOC105649609 [Jatropha curcas]
16 Hb_004032_010 0.0943630592 - - PREDICTED: uncharacterized protein LOC105635123 [Jatropha curcas]
17 Hb_001814_050 0.0950540745 - - PREDICTED: single-stranded DNA-binding protein, mitochondrial isoform X1 [Jatropha curcas]
18 Hb_004502_020 0.095570035 - - PREDICTED: DNA-directed RNA polymerase II subunit 4 [Jatropha curcas]
19 Hb_003633_030 0.0958548844 - - f-actin capping protein alpha, putative [Ricinus communis]
20 Hb_001421_060 0.0967708219 - - PREDICTED: tobamovirus multiplication protein 2B isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_002296_040 Hb_002296_040 Hb_002596_040 Hb_002596_040 Hb_002296_040--Hb_002596_040 Hb_002662_030 Hb_002662_030 Hb_002296_040--Hb_002662_030 Hb_002260_150 Hb_002260_150 Hb_002296_040--Hb_002260_150 Hb_000326_090 Hb_000326_090 Hb_002296_040--Hb_000326_090 Hb_000707_030 Hb_000707_030 Hb_002296_040--Hb_000707_030 Hb_007735_030 Hb_007735_030 Hb_002296_040--Hb_007735_030 Hb_076693_030 Hb_076693_030 Hb_002596_040--Hb_076693_030 Hb_008695_040 Hb_008695_040 Hb_002596_040--Hb_008695_040 Hb_001421_060 Hb_001421_060 Hb_002596_040--Hb_001421_060 Hb_010180_010 Hb_010180_010 Hb_002596_040--Hb_010180_010 Hb_002596_040--Hb_002662_030 Hb_000792_130 Hb_000792_130 Hb_002662_030--Hb_000792_130 Hb_002662_030--Hb_008695_040 Hb_005400_030 Hb_005400_030 Hb_002662_030--Hb_005400_030 Hb_000656_170 Hb_000656_170 Hb_002662_030--Hb_000656_170 Hb_005615_080 Hb_005615_080 Hb_002260_150--Hb_005615_080 Hb_002260_150--Hb_002596_040 Hb_010423_040 Hb_010423_040 Hb_002260_150--Hb_010423_040 Hb_002260_150--Hb_000326_090 Hb_003633_030 Hb_003633_030 Hb_002260_150--Hb_003633_030 Hb_000083_170 Hb_000083_170 Hb_000326_090--Hb_000083_170 Hb_066768_010 Hb_066768_010 Hb_000326_090--Hb_066768_010 Hb_005867_020 Hb_005867_020 Hb_000326_090--Hb_005867_020 Hb_031089_040 Hb_031089_040 Hb_000326_090--Hb_031089_040 Hb_001250_060 Hb_001250_060 Hb_000326_090--Hb_001250_060 Hb_009793_010 Hb_009793_010 Hb_000707_030--Hb_009793_010 Hb_004032_100 Hb_004032_100 Hb_000707_030--Hb_004032_100 Hb_000707_030--Hb_007735_030 Hb_000331_450 Hb_000331_450 Hb_000707_030--Hb_000331_450 Hb_004032_010 Hb_004032_010 Hb_000707_030--Hb_004032_010 Hb_007735_030--Hb_004032_100 Hb_007735_030--Hb_005400_030 Hb_180301_010 Hb_180301_010 Hb_007735_030--Hb_180301_010 Hb_000024_030 Hb_000024_030 Hb_007735_030--Hb_000024_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.7701 11.1398 15.381 38.6042 24.0007 58.6901
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
48.0814 69.0212 27.2083 30.7485 16.1965

CAGE analysis