Hb_002296_050

Information

Type -
Description -
Location Contig2296: 56325-57468
Sequence    

Annotation

kegg
ID atr:s00001p00247600
description AMTR_s00001p00247600; hypothetical protein
nr
ID ERM96425.1
description hypothetical protein AMTR_s00001p00247600 [Amborella trichopoda]
swissprot
ID -
description -
trembl
ID K4CMH6
description Uncharacterized protein OS=Solanum lycopersicum GN=Solyc08g074580.2 PE=4 SV=1
Gene Ontology
ID GO:0005737
description cytoplasmic trna 2-thiolation protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002296_050 0.0 - - hypothetical protein AMTR_s00001p00247600 [Amborella trichopoda]
2 Hb_000107_190 0.0609323732 - - 50S ribosomal protein L20 [Hevea brasiliensis]
3 Hb_000220_040 0.0663400299 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000610_010 0.0698028699 - - PREDICTED: SKP1-like protein 1B [Musa acuminata subsp. malaccensis]
5 Hb_010068_040 0.0739169722 - - PREDICTED: uncharacterized protein LOC105632964 [Jatropha curcas]
6 Hb_021576_040 0.0761331359 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000009_530 0.0782984461 - - PREDICTED: uncharacterized protein LOC105639628 [Jatropha curcas]
8 Hb_004032_430 0.0797135212 - - PREDICTED: uncharacterized protein LOC105635169 [Jatropha curcas]
9 Hb_002585_040 0.080098577 - - PREDICTED: cell division control protein 48 homolog B [Jatropha curcas]
10 Hb_012389_020 0.0828813694 - - hypothetical protein POPTR_0006s05190g [Populus trichocarpa]
11 Hb_004116_060 0.0837854412 - - PREDICTED: nuclear pore complex protein NUP88 [Jatropha curcas]
12 Hb_000144_100 0.0854748742 - - PREDICTED: iron-sulfur assembly protein IscA-like 2, mitochondrial [Jatropha curcas]
13 Hb_001430_120 0.0857207598 - - PREDICTED: DNA polymerase delta subunit 4 [Jatropha curcas]
14 Hb_004785_190 0.085839291 - - PHD finger family protein [Populus trichocarpa]
15 Hb_120410_010 0.0859035974 - - PREDICTED: vesicle-associated membrane protein 727-like [Solanum tuberosum]
16 Hb_002234_140 0.0863301382 - - DNA-directed RNA polymerase II family protein [Populus trichocarpa]
17 Hb_000275_170 0.086417602 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-3b-like [Jatropha curcas]
18 Hb_003292_040 0.0877836892 transcription factor TF Family: MBF1 uncharacterized protein LOC100500420 [Glycine max]
19 Hb_000308_030 0.0880379478 - - PREDICTED: uncharacterized protein LOC105639686 [Jatropha curcas]
20 Hb_000174_110 0.0884401522 - - PREDICTED: INO80 complex subunit D-like [Jatropha curcas]

Gene co-expression network

sample Hb_002296_050 Hb_002296_050 Hb_000107_190 Hb_000107_190 Hb_002296_050--Hb_000107_190 Hb_000220_040 Hb_000220_040 Hb_002296_050--Hb_000220_040 Hb_000610_010 Hb_000610_010 Hb_002296_050--Hb_000610_010 Hb_010068_040 Hb_010068_040 Hb_002296_050--Hb_010068_040 Hb_021576_040 Hb_021576_040 Hb_002296_050--Hb_021576_040 Hb_000009_530 Hb_000009_530 Hb_002296_050--Hb_000009_530 Hb_073973_130 Hb_073973_130 Hb_000107_190--Hb_073973_130 Hb_000107_190--Hb_000610_010 Hb_002192_080 Hb_002192_080 Hb_000107_190--Hb_002192_080 Hb_058972_010 Hb_058972_010 Hb_000107_190--Hb_058972_010 Hb_005337_090 Hb_005337_090 Hb_000107_190--Hb_005337_090 Hb_000144_100 Hb_000144_100 Hb_000220_040--Hb_000144_100 Hb_000275_170 Hb_000275_170 Hb_000220_040--Hb_000275_170 Hb_003125_200 Hb_003125_200 Hb_000220_040--Hb_003125_200 Hb_004032_430 Hb_004032_430 Hb_000220_040--Hb_004032_430 Hb_000796_210 Hb_000796_210 Hb_000220_040--Hb_000796_210 Hb_000610_010--Hb_000009_530 Hb_004093_090 Hb_004093_090 Hb_000610_010--Hb_004093_090 Hb_003687_230 Hb_003687_230 Hb_000610_010--Hb_003687_230 Hb_000610_010--Hb_073973_130 Hb_003292_040 Hb_003292_040 Hb_000610_010--Hb_003292_040 Hb_000174_110 Hb_000174_110 Hb_010068_040--Hb_000174_110 Hb_033153_070 Hb_033153_070 Hb_010068_040--Hb_033153_070 Hb_000334_270 Hb_000334_270 Hb_010068_040--Hb_000334_270 Hb_002175_030 Hb_002175_030 Hb_010068_040--Hb_002175_030 Hb_003029_030 Hb_003029_030 Hb_010068_040--Hb_003029_030 Hb_001433_070 Hb_001433_070 Hb_010068_040--Hb_001433_070 Hb_002234_140 Hb_002234_140 Hb_021576_040--Hb_002234_140 Hb_021576_040--Hb_000009_530 Hb_021576_040--Hb_000144_100 Hb_021576_040--Hb_000610_010 Hb_000710_010 Hb_000710_010 Hb_021576_040--Hb_000710_010 Hb_000286_070 Hb_000286_070 Hb_000009_530--Hb_000286_070 Hb_000009_530--Hb_003687_230 Hb_000009_530--Hb_004093_090 Hb_000009_530--Hb_000144_100 Hb_000009_530--Hb_003292_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.44919 4.54871 4.83312 3.09029 5.22579 5.62871
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.18872 6.69376 2.26051 2.69978 1.76675

CAGE analysis