Hb_002298_030

Information

Type -
Description -
Location Contig2298: 109629-111239
Sequence    

Annotation

kegg
ID rcu:RCOM_1590300
description Protein COQ10 B, mitochondrial precursor, putative
nr
ID XP_012071659.1
description PREDICTED: coenzyme Q-binding protein COQ10 homolog, mitochondrial [Jatropha curcas]
swissprot
ID Q6PBN4
description Coenzyme Q-binding protein COQ10 homolog, mitochondrial OS=Danio rerio GN=zgc:73324 PE=2 SV=2
trembl
ID A0A067L2L2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04259 PE=4 SV=1
Gene Ontology
ID GO:0015824
description coenzyme q-binding protein coq10 mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23909: 98120-111483 , PASA_asmbl_23910: 98126-111507 , PASA_asmbl_23911: 108663-109679
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002298_030 0.0 - - PREDICTED: coenzyme Q-binding protein COQ10 homolog, mitochondrial [Jatropha curcas]
2 Hb_006618_120 0.0663158897 - - PREDICTED: uncharacterized protein LOC105645969 [Jatropha curcas]
3 Hb_004032_030 0.0782530605 - - PREDICTED: RNA-binding protein 24-like isoform X1 [Populus euphratica]
4 Hb_005054_080 0.0835768971 transcription factor TF Family: LIM Pollen-specific protein SF3, putative [Ricinus communis]
5 Hb_005695_120 0.0907702201 - - Pollen-specific protein C13 precursor, putative [Ricinus communis]
6 Hb_154948_040 0.0911332938 - - hypothetical protein B456_013G043800 [Gossypium raimondii]
7 Hb_000300_630 0.0953420137 - - PREDICTED: 5'-adenylylsulfate reductase-like 7 [Jatropha curcas]
8 Hb_000116_270 0.095367124 - - PREDICTED: SRSF protein kinase 2-like [Jatropha curcas]
9 Hb_000783_010 0.0954394219 - - PREDICTED: ras-related protein RABF1 [Jatropha curcas]
10 Hb_001159_130 0.0980300817 - - PREDICTED: protein cornichon homolog 4 [Jatropha curcas]
11 Hb_000453_160 0.0986140347 - - vacuolar protein sorting 26, vps26, putative [Ricinus communis]
12 Hb_187679_010 0.0989006125 - - -
13 Hb_000212_450 0.0993372193 - - PREDICTED: basic leucine zipper and W2 domain-containing protein 2 [Jatropha curcas]
14 Hb_007009_010 0.0996336997 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At3g05675 [Populus euphratica]
15 Hb_001936_010 0.0996873272 - - hypothetical protein Csa_2G348280 [Cucumis sativus]
16 Hb_003929_270 0.1007011116 - - S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis]
17 Hb_017895_040 0.1012558968 - - hypothetical protein POPTR_0006s08120g [Populus trichocarpa]
18 Hb_000608_050 0.1017844809 - - PREDICTED: GDT1-like protein 4 [Jatropha curcas]
19 Hb_001699_100 0.1024363318 - - PREDICTED: calmodulin-lysine N-methyltransferase [Jatropha curcas]
20 Hb_084646_010 0.1032854022 - - hypothetical protein CICLE_v10031746mg [Citrus clementina]

Gene co-expression network

sample Hb_002298_030 Hb_002298_030 Hb_006618_120 Hb_006618_120 Hb_002298_030--Hb_006618_120 Hb_004032_030 Hb_004032_030 Hb_002298_030--Hb_004032_030 Hb_005054_080 Hb_005054_080 Hb_002298_030--Hb_005054_080 Hb_005695_120 Hb_005695_120 Hb_002298_030--Hb_005695_120 Hb_154948_040 Hb_154948_040 Hb_002298_030--Hb_154948_040 Hb_000300_630 Hb_000300_630 Hb_002298_030--Hb_000300_630 Hb_006618_120--Hb_000300_630 Hb_004627_040 Hb_004627_040 Hb_006618_120--Hb_004627_040 Hb_008246_060 Hb_008246_060 Hb_006618_120--Hb_008246_060 Hb_013575_010 Hb_013575_010 Hb_006618_120--Hb_013575_010 Hb_000116_270 Hb_000116_270 Hb_006618_120--Hb_000116_270 Hb_004032_030--Hb_005054_080 Hb_004032_030--Hb_005695_120 Hb_000417_100 Hb_000417_100 Hb_004032_030--Hb_000417_100 Hb_000392_340 Hb_000392_340 Hb_004032_030--Hb_000392_340 Hb_003929_270 Hb_003929_270 Hb_004032_030--Hb_003929_270 Hb_005054_080--Hb_000392_340 Hb_005054_080--Hb_005695_120 Hb_000608_050 Hb_000608_050 Hb_005054_080--Hb_000608_050 Hb_005765_050 Hb_005765_050 Hb_005054_080--Hb_005765_050 Hb_052805_010 Hb_052805_010 Hb_005695_120--Hb_052805_010 Hb_005695_120--Hb_003929_270 Hb_000264_110 Hb_000264_110 Hb_005695_120--Hb_000264_110 Hb_000002_380 Hb_000002_380 Hb_154948_040--Hb_000002_380 Hb_017895_040 Hb_017895_040 Hb_154948_040--Hb_017895_040 Hb_000390_300 Hb_000390_300 Hb_154948_040--Hb_000390_300 Hb_002105_100 Hb_002105_100 Hb_154948_040--Hb_002105_100 Hb_045003_010 Hb_045003_010 Hb_154948_040--Hb_045003_010 Hb_007878_010 Hb_007878_010 Hb_154948_040--Hb_007878_010 Hb_000300_630--Hb_004627_040 Hb_005023_010 Hb_005023_010 Hb_000300_630--Hb_005023_010 Hb_001018_110 Hb_001018_110 Hb_000300_630--Hb_001018_110 Hb_001699_100 Hb_001699_100 Hb_000300_630--Hb_001699_100 Hb_001633_130 Hb_001633_130 Hb_000300_630--Hb_001633_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.8401 7.43398 12.2652 30.4133 7.05472 14.4623
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.6685 20.1212 17.9064 10.2917 9.24852

CAGE analysis