Hb_002299_020

Information

Type -
Description -
Location Contig2299: 82361-83464
Sequence    

Annotation

kegg
ID rcu:RCOM_0626470
description hypothetical protein
nr
ID XP_002526794.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID O80624
description Probable membrane-associated kinase regulator 4 OS=Arabidopsis thaliana GN=MAKR4 PE=3 SV=1
trembl
ID B9SLC5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0626470 PE=4 SV=1
Gene Ontology
ID GO:0009506
description probable membrane-associated kinase regulator 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002299_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_070268_010 0.2630338189 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
3 Hb_000179_160 0.272057992 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-3-like [Jatropha curcas]
4 Hb_007218_030 0.2765320429 - - PREDICTED: uncharacterized protein At4g02000-like [Jatropha curcas]
5 Hb_002081_170 0.2822627028 - - Flavonol 3-sulfotransferase, putative [Ricinus communis]
6 Hb_019863_020 0.2903049149 - - PREDICTED: wound-induced protein 1 [Jatropha curcas]
7 Hb_044555_010 0.290866448 - - PREDICTED: choline monooxygenase, chloroplastic isoform X3 [Jatropha curcas]
8 Hb_006376_010 0.3014020347 - - PREDICTED: uncharacterized protein LOC104090718 [Nicotiana tomentosiformis]
9 Hb_000136_160 0.3032689018 - - calmodulin binding protein, putative [Ricinus communis]
10 Hb_004903_010 0.3148965559 - - -
11 Hb_006775_050 0.3150187569 - - PREDICTED: GDSL esterase/lipase At1g29670 isoform X2 [Nicotiana sylvestris]
12 Hb_001563_020 0.3302197777 transcription factor TF Family: TRAF aberrant large forked product, putative [Ricinus communis]
13 Hb_004097_040 0.3383732916 - - PREDICTED: aspartate--tRNA ligase, mitochondrial [Jatropha curcas]
14 Hb_001417_080 0.350028783 - - Calmodulin, putative [Ricinus communis]
15 Hb_001529_070 0.3522839387 transcription factor TF Family: AP2 hypothetical protein POPTR_0018s09900g [Populus trichocarpa]
16 Hb_000566_020 0.358847733 - - hypothetical protein POPTR_0001s13520g [Populus trichocarpa]
17 Hb_007913_040 0.3591102877 - - sterol desaturase, putative [Ricinus communis]
18 Hb_000083_190 0.3598549492 - - low affinity nitrate transporter, partial [Triticum aestivum]
19 Hb_000574_500 0.3600028372 - - hypothetical protein JCGZ_06123 [Jatropha curcas]
20 Hb_000329_260 0.3634271982 - - hypothetical protein MIMGU_mgv1a016162mg [Erythranthe guttata]

Gene co-expression network

sample Hb_002299_020 Hb_002299_020 Hb_070268_010 Hb_070268_010 Hb_002299_020--Hb_070268_010 Hb_000179_160 Hb_000179_160 Hb_002299_020--Hb_000179_160 Hb_007218_030 Hb_007218_030 Hb_002299_020--Hb_007218_030 Hb_002081_170 Hb_002081_170 Hb_002299_020--Hb_002081_170 Hb_019863_020 Hb_019863_020 Hb_002299_020--Hb_019863_020 Hb_044555_010 Hb_044555_010 Hb_002299_020--Hb_044555_010 Hb_070268_010--Hb_019863_020 Hb_070268_010--Hb_000179_160 Hb_070268_010--Hb_007218_030 Hb_006775_050 Hb_006775_050 Hb_070268_010--Hb_006775_050 Hb_009486_110 Hb_009486_110 Hb_070268_010--Hb_009486_110 Hb_027450_020 Hb_027450_020 Hb_070268_010--Hb_027450_020 Hb_000179_160--Hb_007218_030 Hb_000179_160--Hb_019863_020 Hb_004903_010 Hb_004903_010 Hb_000179_160--Hb_004903_010 Hb_000574_500 Hb_000574_500 Hb_000179_160--Hb_000574_500 Hb_000179_160--Hb_006775_050 Hb_007218_030--Hb_004903_010 Hb_007218_030--Hb_019863_020 Hb_007218_030--Hb_000574_500 Hb_007218_030--Hb_006775_050 Hb_002081_170--Hb_044555_010 Hb_004200_030 Hb_004200_030 Hb_002081_170--Hb_004200_030 Hb_004097_040 Hb_004097_040 Hb_002081_170--Hb_004097_040 Hb_001563_020 Hb_001563_020 Hb_002081_170--Hb_001563_020 Hb_033594_070 Hb_033594_070 Hb_002081_170--Hb_033594_070 Hb_007386_010 Hb_007386_010 Hb_002081_170--Hb_007386_010 Hb_019863_020--Hb_006775_050 Hb_019863_020--Hb_009486_110 Hb_019863_020--Hb_027450_020 Hb_044555_010--Hb_004097_040 Hb_044555_010--Hb_004200_030 Hb_044555_010--Hb_007386_010 Hb_001979_030 Hb_001979_030 Hb_044555_010--Hb_001979_030 Hb_000136_160 Hb_000136_160 Hb_044555_010--Hb_000136_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.039271 0 0.371722 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.25622 0.176446 0 0.0283195 0

CAGE analysis