Hb_002299_050

Information

Type -
Description -
Location Contig2299: 146640-149892
Sequence    

Annotation

kegg
ID pxb:103936753
description chalcone--flavonone isomerase
nr
ID XP_009344895.1
description PREDICTED: chalcone--flavonone isomerase isoform X1 [Pyrus x bretschneideri]
swissprot
ID Q8H0G1
description Chalcone--flavonone isomerase 2 OS=Lotus japonicus GN=CHI2 PE=2 SV=1
trembl
ID D5ADH5
description Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1
Gene Ontology
ID GO:0045430
description chalcone--flavonone isomerase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23920: 146638-149805 , PASA_asmbl_23921: 146675-149852 , PASA_asmbl_23922: 146675-149852
cDNA
(Sanger)
(ID:Location)		 005_I20.ab1: 146657-148075 , 008_E14.ab1: 146662-147814 , 034_C12.ab1: 146657-147866 , 041_E07.ab1: 146657-147870 , 049_O07.ab1: 146638-147552 , 052_N04.ab1: 146662-147846 , 053_J18.ab1: 146748-147892

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002299_050 0.0 - - PREDICTED: chalcone--flavonone isomerase isoform X1 [Pyrus x bretschneideri]
2 Hb_001587_010 0.2132097895 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH25-like [Jatropha curcas]
3 Hb_065525_030 0.2218263395 - - PREDICTED: uncharacterized protein LOC105647810 [Jatropha curcas]
4 Hb_000984_050 0.2229540418 - - sucrose transporter 5 [Hevea brasiliensis]
5 Hb_001278_070 0.2290698396 - - hypothetical protein glysoja_020139 [Glycine soja]
6 Hb_005273_040 0.2321592692 - - -
7 Hb_002407_080 0.2360328041 - - hypothetical protein JCGZ_00752 [Jatropha curcas]
8 Hb_002391_370 0.2367204957 - - PREDICTED: aconitate hydratase 1 [Jatropha curcas]
9 Hb_001014_130 0.2371297412 - - PREDICTED: uncharacterized protein LOC105647301 [Jatropha curcas]
10 Hb_000181_250 0.2382206453 - - PREDICTED: probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 [Jatropha curcas]
11 Hb_002477_220 0.2458663318 - - hypothetical protein POPTR_0017s06650g [Populus trichocarpa]
12 Hb_006816_410 0.2473865233 - - PREDICTED: eukaryotic translation initiation factor 3 subunit A [Jatropha curcas]
13 Hb_039894_010 0.2507462138 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
14 Hb_178884_010 0.2515557977 - - putative disease resistance gene NBS-LRR family protein [Populus trichocarpa]
15 Hb_001541_080 0.2520578429 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002028_170 0.2574605114 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 5 [Jatropha curcas]
17 Hb_005389_110 0.2593968939 - - PREDICTED: uncharacterized protein LOC105637756 [Jatropha curcas]
18 Hb_000009_620 0.2630823523 - - zinc finger protein, putative [Ricinus communis]
19 Hb_011218_080 0.2638963357 - - glutathione-s-transferase theta, gst, putative [Ricinus communis]
20 Hb_000021_100 0.2664062898 - - -

Gene co-expression network

sample Hb_002299_050 Hb_002299_050 Hb_001587_010 Hb_001587_010 Hb_002299_050--Hb_001587_010 Hb_065525_030 Hb_065525_030 Hb_002299_050--Hb_065525_030 Hb_000984_050 Hb_000984_050 Hb_002299_050--Hb_000984_050 Hb_001278_070 Hb_001278_070 Hb_002299_050--Hb_001278_070 Hb_005273_040 Hb_005273_040 Hb_002299_050--Hb_005273_040 Hb_002407_080 Hb_002407_080 Hb_002299_050--Hb_002407_080 Hb_001587_010--Hb_002407_080 Hb_001587_010--Hb_005273_040 Hb_009848_010 Hb_009848_010 Hb_001587_010--Hb_009848_010 Hb_000209_110 Hb_000209_110 Hb_001587_010--Hb_000209_110 Hb_003160_020 Hb_003160_020 Hb_001587_010--Hb_003160_020 Hb_005000_100 Hb_005000_100 Hb_065525_030--Hb_005000_100 Hb_004361_050 Hb_004361_050 Hb_065525_030--Hb_004361_050 Hb_004608_020 Hb_004608_020 Hb_065525_030--Hb_004608_020 Hb_004881_050 Hb_004881_050 Hb_065525_030--Hb_004881_050 Hb_000457_060 Hb_000457_060 Hb_065525_030--Hb_000457_060 Hb_000248_050 Hb_000248_050 Hb_065525_030--Hb_000248_050 Hb_000926_120 Hb_000926_120 Hb_000984_050--Hb_000926_120 Hb_000181_250 Hb_000181_250 Hb_000984_050--Hb_000181_250 Hb_000115_310 Hb_000115_310 Hb_000984_050--Hb_000115_310 Hb_011218_080 Hb_011218_080 Hb_000984_050--Hb_011218_080 Hb_000027_030 Hb_000027_030 Hb_000984_050--Hb_000027_030 Hb_001247_200 Hb_001247_200 Hb_000984_050--Hb_001247_200 Hb_000384_030 Hb_000384_030 Hb_001278_070--Hb_000384_030 Hb_111198_020 Hb_111198_020 Hb_001278_070--Hb_111198_020 Hb_001089_020 Hb_001089_020 Hb_001278_070--Hb_001089_020 Hb_007904_220 Hb_007904_220 Hb_001278_070--Hb_007904_220 Hb_001541_080 Hb_001541_080 Hb_001278_070--Hb_001541_080 Hb_002217_150 Hb_002217_150 Hb_001278_070--Hb_002217_150 Hb_005273_040--Hb_002407_080 Hb_001329_240 Hb_001329_240 Hb_005273_040--Hb_001329_240 Hb_005273_040--Hb_001278_070 Hb_005273_040--Hb_000209_110 Hb_004242_190 Hb_004242_190 Hb_002407_080--Hb_004242_190 Hb_003073_180 Hb_003073_180 Hb_002407_080--Hb_003073_180 Hb_002972_020 Hb_002972_020 Hb_002407_080--Hb_002972_020 Hb_001258_060 Hb_001258_060 Hb_002407_080--Hb_001258_060 Hb_000009_620 Hb_000009_620 Hb_002407_080--Hb_000009_620
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
149.463 30.2518 14.922 13.3265 121.63 199.978
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
35.3687 8.21006 12.3908 278.887 37.4183

CAGE analysis